RNA–Protein interactions for RNA: ENST00000338962.8

LRP1-202, Transcript of LDL receptor related protein 1, humanhuman

TSL 1 (best) BASIC

Gene LRP1, Length 2,169 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP1-202ENST00000338962 ATG4AQ8WYN0 398 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 SLCO2A1Q92959 643 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 ARL8AQ96BM9 186 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 RBM41Q96IZ5 413 aaKnown RBP11.68□□□□□ -0.54
LRP1-202ENST00000338962 SNX27Q96L92 541 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 HEXIM2Q96MH2 286 aaKnown RBP11.68□□□□□ -0.54
LRP1-202ENST00000338962 EIF2AQ9BY44 585 aaKnown RBP11.68□□□□□ -0.54
LRP1-202ENST00000338962 CDHR5Q9HBB8 845 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 MTRF1LQ9UGC7 380 aaKnown RBP11.68□□□□□ -0.54
LRP1-202ENST00000338962 ATP8A1Q9Y2Q0 1164 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 DERAQ9Y315 318 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 F8VP50 259 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 M0QYV0 167 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 MICAL2O94851 1124 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 GAS8O95995 478 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 VDRP11473 427 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 KRT3P12035 628 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 CKBP12277 381 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 PSMC1P62191 440 aaKnown RBP11.68□□□□□ -0.54
LRP1-202ENST00000338962 KRT17Q04695 432 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 MGAT3Q09327 533 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 CALCOCO2Q13137 446 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 KLF1Q13351 362 aaPredicted RBP11.68□□□□□ -0.54
LRP1-202ENST00000338962 LRRC38Q5VT99 294 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 CPXM1Q96SM3 734 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 HERPUD2Q9BSE4 406 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 NT5C1AQ9BXI3 368 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 CHST7Q9NS84 486 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 TMEM39AQ9NV64 488 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 GRHL1Q9NZI5 618 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 WDR35Q9P2L0 1181 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 CYTH4Q9UIA0 394 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.68□□□□□ -0.54
LRP1-202ENST00000338962 PIN4Q9Y237 131 aaKnown RBP11.68□□□□□ -0.54
LRP1-202ENST00000338962 HES2Q9Y543 173 aa11.68□□□□□ -0.54
LRP1-202ENST00000338962 PPFIA2O75334 1257 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 CHRNA1P02708 482 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 KRT1P04264 644 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 MYZAPP0CAP1 466 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 RFC1P35251 1148 aaPredicted RBP11.67□□□□□ -0.54
LRP1-202ENST00000338962 THPOP40225 353 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 NDST1P52848 882 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 OGDHQ02218 1023 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 NFX1Q12986 1120 aaKnown RBP11.67□□□□□ -0.54
LRP1-202ENST00000338962 CNGA2Q16280 664 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 SPDYCQ5MJ68 293 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 KCTD16Q68DU8 428 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 ZDHHC24Q6UX98 284 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 SYDE1Q6ZW31 735 aaPredicted RBP11.67□□□□□ -0.54
LRP1-202ENST00000338962 RCOR2Q8IZ40 523 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 NIPA2Q8N8Q9 360 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 BEST2Q8NFU1 509 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 RNF25Q96BH1 459 aaPredicted RBP11.67□□□□□ -0.54
LRP1-202ENST00000338962 CCDC114Q96M63 670 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 NXF3Q9H4D5 531 aaKnown RBP11.67□□□□□ -0.54
LRP1-202ENST00000338962 KLHL11Q9NVR0 708 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 ASIC3Q9UHC3 531 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 SQORQ9Y6N5 450 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 TRIM43BA6NCK2 446 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 SIGLEC16A6NMB1 481 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 RECQL4O94761 1208 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 TCF4P15884 667 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 ATF7P17544 494 aaPredicted RBP11.67□□□□□ -0.54
LRP1-202ENST00000338962 PSMA2P25787 234 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 AXLP30530 894 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 MRPS6P82932 125 aaKnown RBP11.67□□□□□ -0.54
LRP1-202ENST00000338962 PDCLQ13371 301 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 GLRA4Q5JXX5 417 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 ZNF618Q5T7W0 954 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 TMEM40Q8WWA1 233 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 TRIM43Q96BQ3 446 aaPredicted RBP11.67□□□□□ -0.54
LRP1-202ENST00000338962 ZMAT2Q96NC0 199 aaKnown RBP11.67□□□□□ -0.54
LRP1-202ENST00000338962 FAM129AQ9BZQ8 928 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 DCLK3Q9C098 648 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 CENPHQ9H3R5 247 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 HIPK3Q9H422 1215 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 TUBGCP4Q9UGJ1 667 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 KIAA1257Q9ULG3 409 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 SNX9Q9Y5X1 595 aa11.67□□□□□ -0.54
LRP1-202ENST00000338962 PI4K2BG5E9Z4 385 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 TJP3O95049 919 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 PARNO95453 639 aaKnown RBP11.66□□□□□ -0.54
LRP1-202ENST00000338962 SELPP16109 830 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 PSEN1P49768 467 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 CRYBB1P53674 252 aaPredicted RBP11.66□□□□□ -0.54
LRP1-202ENST00000338962 CCNG2Q16589 344 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 ATP13A4Q4VNC1 1196 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 XYLT1Q86Y38 959 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 LRRC52Q8N7C0 313 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 OR2W6PQ8NHA6 318 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 ATL2Q8NHH9 583 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 FNIP1Q8TF40 1166 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 ATP6V1G3Q96LB4 118 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 APOL6Q9BWW8 343 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 DDX56Q9NY93 547 aaKnown RBP11.66□□□□□ -0.54
LRP1-202ENST00000338962 CNTN3Q9P232 1028 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 TJP2Q9UDY2 1190 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 TSPAN16Q9UKR8 245 aa11.66□□□□□ -0.54
LRP1-202ENST00000338962 R3HDM2Q9Y2K5 976 aaKnown RBP11.66□□□□□ -0.54
LRP1-202ENST00000338962 HMGB1P1B2RPK0 211 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms