RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SAMD4BQ5PRF9 694 aaKnown RBP14.79□□□□□ -0.04
COL7A1-201ENST00000328333 ACTRT1Q8TDG2 376 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 CLCA2Q9UQC9 943 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 RBP1P09455 135 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 GRM4Q14833 912 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 GANCQ8TET4 914 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 MAP3K20Q9NYL2 800 aaKnown RBP14.79□□□□□ -0.04
COL7A1-201ENST00000328333 SPACA6W5XKT8 324 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 TRAPPC3O43617 180 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 UCHL3P15374 230 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 CCNA2P20248 432 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 ITGAXP20702 1163 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 DMAP1Q9NPF5 467 aaPredicted RBP14.79□□□□□ -0.04
COL7A1-201ENST00000328333 POLG2Q9UHN1 485 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 ING4Q9UNL4 249 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 POTEMA6NI47 508 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 TEX28O15482 410 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 MTTPP55157 894 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 PEG10Q86TG7 708 aaKnown RBP14.79□□□□□ -0.04
COL7A1-201ENST00000328333 AFG1LQ8WV93 481 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 SETBP1Q9Y6X0 1596 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 MYL4P12829 197 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 EXOC3L1Q86VI1 746 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 CRNNQ9UBG3 495 aaPredicted RBP14.78□□□□□ -0.04
COL7A1-201ENST00000328333 IFNGR2P38484 337 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ACLYP53396 1101 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 TRAF3Q13114 568 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 HIST2H2ACQ16777 129 aaPredicted RBP14.78□□□□□ -0.04
COL7A1-201ENST00000328333 HIST2H2AA3Q6FI13 130 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ATXN7L3BQ96GX2 97 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ERGIC2Q96RQ1 377 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 BTN3A3O00478 584 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ATP1A4Q13733 1029 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 THNSL1Q8IYQ7 743 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 LY9Q9HBG7 655 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ZCCHC18P0CG32 403 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 TGM2P21980 687 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ITGA9Q13797 1035 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 LIN54Q6MZP7 749 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 EIF1ADQ8N9N8 165 aaKnown RBP14.78□□□□□ -0.04
COL7A1-201ENST00000328333 L3MBTL3Q96JM7 780 aaPredicted RBP14.78□□□□□ -0.04
COL7A1-201ENST00000328333 RAD51BO15315 384 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 SNAP91O60641 907 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 GDF11O95390 407 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ITGA8P53708 1063 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 PRKCQQ04759 706 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 MTA1Q13330 715 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 IFNEQ86WN2 208 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 UGT2B28Q9BY64 529 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ATP6V1HQ9UI12 483 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ANKRD6Q9Y2G4 727 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ATP10AO60312 1499 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 GUCA1AP43080 201 aaPredicted RBP14.78□□□□□ -0.04
COL7A1-201ENST00000328333 CLEC16AQ2KHT3 1053 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 THUMPD3Q9BV44 507 aaKnown RBP14.78□□□□□ -0.04
COL7A1-201ENST00000328333 KCNF1Q9H3M0 494 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 CNOT7Q9UIV1 285 aaKnown RBP14.78□□□□□ -0.04
COL7A1-201ENST00000328333 ADORA1P30542 326 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 GMFBP60983 142 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 CACNB1Q02641 598 aaPredicted RBP14.78□□□□□ -0.04
COL7A1-201ENST00000328333 TXNRD1Q16881 649 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 SPICE1Q8N0Z3 855 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 FUT8Q9BYC5 575 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 TBX22Q9Y458 520 aa14.78□□□□□ -0.04
COL7A1-201ENST00000328333 CPDO75976 1380 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 RHOBTB3O94955 611 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 HSMCR30P0CW71 290 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 TUBA3CQ13748 450 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 ANKRD40Q6AI12 368 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 PPP1R14BQ96C90 147 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 NCAM2O15394 837 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 WEE2P0C1S8 567 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 TMEM253P0C7T8 217 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 XIAPP98170 497 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 PHKG1Q16816 387 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 HEATR9A2RTY3 570 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 SESN2P58004 480 aaPredicted RBP14.77□□□□□ -0.04
COL7A1-201ENST00000328333 SNX31Q8N9S9 440 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 PPP1R36Q96LQ0 422 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 FKBP14Q9NWM8 211 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 AKAP7Q9P0M2 348 aaPredicted RBP14.77□□□□□ -0.04
COL7A1-201ENST00000328333 PCSK1NQ9UHG2 260 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 SDR42E2A6NKP2 422 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 TMEM114B3SHH9 223 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 TCN1P20061 433 aaPredicted RBP14.77□□□□□ -0.04
COL7A1-201ENST00000328333 MYBPC2Q14324 1141 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 FOXP4Q8IVH2 680 aaPredicted RBP14.77□□□□□ -0.04
COL7A1-201ENST00000328333 RMDN3Q96TC7 470 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 KCTD14Q9BQ13 255 aaPredicted RBP14.77□□□□□ -0.04
COL7A1-201ENST00000328333 BTG4Q9NY30 223 aa14.77□□□□□ -0.04
COL7A1-201ENST00000328333 DPY19L2Q6NUT2 758 aa14.77□□□□□ -0.05
COL7A1-201ENST00000328333 ARHGEF19Q8IW93 802 aa14.77□□□□□ -0.05
COL7A1-201ENST00000328333 KBTBD8Q8NFY9 601 aa14.77□□□□□ -0.05
COL7A1-201ENST00000328333 LENG1Q96BZ8 264 aaPredicted RBP14.77□□□□□ -0.05
COL7A1-201ENST00000328333 MNTQ99583 582 aa14.77□□□□□ -0.05
COL7A1-201ENST00000328333 THAP1Q9NVV9 213 aa14.77□□□□□ -0.05
COL7A1-201ENST00000328333 CORO1CQ9ULV4 474 aaPredicted RBP14.77□□□□□ -0.05
COL7A1-201ENST00000328333 C1orf232A0A0U1RR37 186 aa14.77□□□□□ -0.05
COL7A1-201ENST00000328333 S100A6P06703 90 aa14.77□□□□□ -0.05
COL7A1-201ENST00000328333 ZNF618Q5T7W0 954 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms