RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 DLGAP5Q15398 846 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 HIF1AQ16665 826 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 KLHL35Q6PF15 583 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 CENPUQ71F23 418 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 MCOLN2Q8IZK6 566 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 DAW1Q8N136 415 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 GAB3Q8WWW8 586 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 SHC3Q92529 594 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 CNBD2Q96M20 576 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 TUBB6Q9BUF5 446 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 LZTS1Q9Y250 596 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 CLPTM1O96005 669 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 TFPTP0C1Z6 253 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 CD1EP15812 388 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 GAP43P17677 238 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 SLC1A1P43005 524 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 ETV4P43268 484 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 PPP4CP60510 307 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 TMPRSS15P98073 1019 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 CETN1Q12798 172 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 PPP6R3Q5H9R7 873 aaPredicted RBP14.1□□□□□ -0.15
SKA3-201ENST00000298260 PPP1R18Q6NYC8 613 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 C1orf228Q6PIY5 440 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 B3GNT6Q6ZMB0 384 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 TMC7Q7Z402 723 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 HPS6Q86YV9 775 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 BBOF1Q8ND07 529 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 MIPOL1Q8TD10 442 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 SUDS3Q9H7L9 328 aaPredicted RBP14.1□□□□□ -0.15
SKA3-201ENST00000298260 IL1RAPL1Q9NZN1 696 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 TAGLN3Q9UI15 199 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 NAV1Q8NEY1 1877 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 CYP3A7-CYP3A51PA0A087WV96 503 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 TRPA1O75762 1119 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 CYP3A7P24462 503 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 SLC5A2P31639 672 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 CCR3P51677 355 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 IKQ13123 557 aaPredicted RBP14.1□□□□□ -0.15
SKA3-201ENST00000298260 HNRNPDQ14103 355 aaKnown RBP14.1□□□□□ -0.15
SKA3-201ENST00000298260 CLEC16AQ2KHT3 1053 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 PRPF18Q99633 342 aaKnown RBP14.1□□□□□ -0.15
SKA3-201ENST00000298260 HSD17B14Q9BPX1 270 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 SIKE1Q9BRV8 207 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 DDX4Q9NQI0 724 aaKnown RBP14.1□□□□□ -0.15
SKA3-201ENST00000298260 XPNPEP1Q9NQW7 623 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 INPP5FQ9Y2H2 1132 aa14.1□□□□□ -0.15
SKA3-201ENST00000298260 AVILO75366 819 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 EIF4BP23588 611 aaKnown RBP14.09□□□□□ -0.15
SKA3-201ENST00000298260 CPOXP36551 454 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 RGS2P41220 211 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 RPL7AP62424 266 aaKnown RBP14.09□□□□□ -0.15
SKA3-201ENST00000298260 NFX1Q12986 1120 aaKnown RBP14.09□□□□□ -0.15
SKA3-201ENST00000298260 PTK7Q13308 1070 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 GRM2Q14416 872 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 KCTD21Q4G0X4 260 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 ADGRD1Q6QNK2 874 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 WDR66Q8TBY9 1149 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 HELQQ8TDG4 1101 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 CSRNP1Q96S65 589 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 INIPQ9NRY2 104 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 PTTG2Q9NZH5 202 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 HSPBP1Q9NZL4 362 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 NARFQ9UHQ1 456 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 SLC24A2Q9UI40 661 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 ZBTB21Q9ULJ3 1066 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 C10orf71Q711Q0 1435 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 PROCP04070 461 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 CCDC166P0CW27 439 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 DSG3P32926 999 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 STT3AP46977 705 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 PSMD7P51665 324 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 BMPR2Q13873 1038 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 HIC1Q14526 733 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 CHI3L2Q15782 390 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 KBTBD12Q3ZCT8 623 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 EFHC1Q5JVL4 640 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 RSPH3Q86UC2 560 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 PALM2Q8IXS6 379 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.09□□□□□ -0.15
SKA3-201ENST00000298260 WDR18Q9BV38 432 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 KIFC3Q9BVG8 833 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 ZNF652Q9Y2D9 606 aa14.09□□□□□ -0.15
SKA3-201ENST00000298260 LYPLA1O75608 230 aaPredicted RBP14.08□□□□□ -0.16
SKA3-201ENST00000298260 SMAD1Q15797 465 aaKnown RBP14.08□□□□□ -0.16
SKA3-201ENST00000298260 ANKRD20A4Q4UJ75 823 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 TMCO4Q5TGY1 634 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 TSHZ1Q6ZSZ6 1077 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 CRYGNQ8WXF5 182 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 MBOAT7Q96N66 472 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 TRIM56Q9BRZ2 755 aaKnown RBP14.08□□□□□ -0.16
SKA3-201ENST00000298260 APOL6Q9BWW8 343 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 PDGFDQ9GZP0 370 aaPredicted RBP14.08□□□□□ -0.16
SKA3-201ENST00000298260 GPRC5CQ9NQ84 441 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 DOLKQ9UPQ8 538 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 SMIM31A0A1B0GVY4 71 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 TMEM63AO94886 807 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 MFAP3P55082 362 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 PDK1Q15118 436 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 ALLCQ8N6M5 410 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 CATSPER2Q96P56 530 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms