RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF40	YNL288W	YMR244W	Q04018	355 aa		4.61	□□□□□ -1.67
CAF40	YNL288W	YMR253C	Q04835	414 aa		4.61	□□□□□ -1.67
CAF40	YNL288W	CCW12	Q12127	133 aa		4.61	□□□□□ -1.67
CAF40	YNL288W	RPL31B	P0C2H9	113 aa	Known RBP	4.6	□□□□□ -1.67
CAF40	YNL288W	RPS8A	P0CX39	200 aa	Known RBP	4.6	□□□□□ -1.67
CAF40	YNL288W	RPS8B	P0CX40	200 aa	Known RBP	4.6	□□□□□ -1.67
CAF40	YNL288W	YPT10	P38146	199 aa		4.6	□□□□□ -1.67
CAF40	YNL288W	PRE5	P40302	234 aa	Known RBP	4.6	□□□□□ -1.67
CAF40	YNL288W	ATP19	P81451	68 aa		4.6	□□□□□ -1.67
CAF40	YNL288W	UTP23	Q12339	254 aa	Known RBP	4.6	□□□□□ -1.67
CAF40	YNL288W	YLR302C	O13544	120 aa		4.59	□□□□□ -1.67
CAF40	YNL288W	CPT1	P17898	393 aa		4.59	□□□□□ -1.67
CAF40	YNL288W	YHR022C	P38763	256 aa		4.59	□□□□□ -1.67
CAF40	YNL288W	YER135C	P40082	130 aa		4.59	□□□□□ -1.67
CAF40	YNL288W	SPI1	P40092	148 aa		4.59	□□□□□ -1.67
CAF40	YNL288W	YIL163C	P40448	117 aa		4.59	□□□□□ -1.67
CAF40	YNL288W	YGL185C	P53100	379 aa		4.59	□□□□□ -1.67
CAF40	YNL288W	YLR342W-A	Q3E810	57 aa		4.59	□□□□□ -1.67
CAF40	YNL288W	POF1	P25576	258 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	LAC1	P28496	418 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	SRP21	P32342	167 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	HOT13	P36078	116 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	MRPL4	P36517	319 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	MRPS9	P38120	278 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	MIG3	P39943	394 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	BNS1	P50084	137 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	DAD4	P69851	72 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	COX12	Q01519	83 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	YOR105W	Q08504	108 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	DAD1	Q12248	94 aa		4.58	□□□□□ -1.68
CAF40	YNL288W	RPL2A	P0CX45	254 aa	Known RBP	4.57	□□□□□ -1.68
CAF40	YNL288W	RPL2B	P0CX46	254 aa	Known RBP	4.57	□□□□□ -1.68
CAF40	YNL288W	TIR1	P10863	254 aa		4.57	□□□□□ -1.68
CAF40	YNL288W	COQ3	P27680	312 aa		4.57	□□□□□ -1.68
CAF40	YNL288W	AUA1	P32450	94 aa		4.57	□□□□□ -1.68
CAF40	YNL288W	HSP10	P38910	106 aa		4.57	□□□□□ -1.68
CAF40	YNL288W	YMR141C	P40211	102 aa		4.57	□□□□□ -1.68
CAF40	YNL288W	HIT1	P46973	164 aa		4.57	□□□□□ -1.68
CAF40	YNL288W	COX16	P47081	118 aa		4.57	□□□□□ -1.68
CAF40	YNL288W	DAD3	P69850	94 aa		4.57	□□□□□ -1.68
CAF40	YNL288W	NAT3	Q06504	195 aa		4.57	□□□□□ -1.68
CAF40	YNL288W	SMT3	Q12306	101 aa	Known RBP	4.57	□□□□□ -1.68
CAF40	YNL288W	FMP49	A0A023PZB3	126 aa		4.56	□□□□□ -1.68
CAF40	YNL288W	RPS11A	P0CX47	156 aa	Known RBP	4.56	□□□□□ -1.68
CAF40	YNL288W	RPS11B	P0CX48	156 aa	Known RBP	4.56	□□□□□ -1.68
CAF40	YNL288W	HUA1	P40325	198 aa		4.56	□□□□□ -1.68
CAF40	YNL288W	MOG1	P47123	218 aa		4.56	□□□□□ -1.68
CAF40	YNL288W	GLO1	P50107	326 aa		4.56	□□□□□ -1.68
CAF40	YNL288W	TIM21	P53220	239 aa		4.56	□□□□□ -1.68
CAF40	YNL288W	SNO1	Q03144	224 aa		4.56	□□□□□ -1.68
CAF40	YNL288W	ORM2	Q06144	216 aa		4.56	□□□□□ -1.68
CAF40	YNL288W	DCN1	Q12395	269 aa		4.56	□□□□□ -1.68
CAF40	YNL288W	ADH3	P07246	375 aa	Known RBP	4.55	□□□□□ -1.68
CAF40	YNL288W	CNB1	P25296	175 aa		4.55	□□□□□ -1.68
CAF40	YNL288W	SRP14	P38985	146 aa		4.55	□□□□□ -1.68
CAF40	YNL288W	YFR045W	P43617	309 aa		4.55	□□□□□ -1.68
CAF40	YNL288W	UPS3	Q04006	179 aa		4.55	□□□□□ -1.68
CAF40	YNL288W	YLR118C	Q12354	227 aa		4.55	□□□□□ -1.68
CAF40	YNL288W	VAR1	P02381	398 aa		4.54	□□□□□ -1.68
CAF40	YNL288W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
CAF40	YNL288W	KEG1	P43614	200 aa		4.54	□□□□□ -1.68
CAF40	YNL288W	APS2	Q00381	147 aa		4.54	□□□□□ -1.68
CAF40	YNL288W	GIM5	Q04493	163 aa		4.54	□□□□□ -1.68
CAF40	YNL288W	SCW10	Q04951	389 aa		4.54	□□□□□ -1.68
CAF40	YNL288W	RPL12A	P0CX53	165 aa	Known RBP	4.53	□□□□□ -1.68
CAF40	YNL288W	RPL12B	P0CX54	165 aa		4.53	□□□□□ -1.68
CAF40	YNL288W	NHP6A	P11632	93 aa	Known RBP	4.53	□□□□□ -1.68
CAF40	YNL288W	QRI5	P32344	111 aa		4.53	□□□□□ -1.68
CAF40	YNL288W	NTF2	P33331	125 aa	Known RBP	4.53	□□□□□ -1.68
CAF40	YNL288W	NRG2	P38082	220 aa		4.53	□□□□□ -1.68
CAF40	YNL288W	YBR090C	P38253	122 aa		4.53	□□□□□ -1.68
CAF40	YNL288W	MGA1	P53050	456 aa		4.53	□□□□□ -1.68
CAF40	YNL288W	DUO1	P53168	247 aa	Known RBP	4.53	□□□□□ -1.68
CAF40	YNL288W	YOP1	Q12402	180 aa		4.53	□□□□□ -1.68
CAF40	YNL288W	YCL001W-B	Q96VH2	84 aa		4.53	□□□□□ -1.68
CAF40	YNL288W	HMRA1	P0CY11	126 aa		4.52	□□□□□ -1.69
CAF40	YNL288W	FZF1	P32805	299 aa		4.52	□□□□□ -1.69
CAF40	YNL288W	ATG8	P38182	117 aa	RIP-Chip data	4.52	□□□□□ -1.69	not detected
CAF40	YNL288W	PGD1	P40356	397 aa		4.52	□□□□□ -1.69
CAF40	YNL288W	PAU15	P40585	124 aa		4.52	□□□□□ -1.69
CAF40	YNL288W	YDR366C	P87287	132 aa		4.52	□□□□□ -1.69
CAF40	YNL288W	TIM22	Q12328	207 aa		4.52	□□□□□ -1.69
CAF40	YNL288W	YCR075W-A	Q3E830	75 aa		4.52	□□□□□ -1.69
CAF40	YNL288W	YBR126W-A	Q8TGU7	68 aa		4.52	□□□□□ -1.69
CAF40	YNL288W	YOL085C	Q99345	113 aa		4.52	□□□□□ -1.69
CAF40	YNL288W	AQY1	P0CD91	305 aa		4.51	□□□□□ -1.69
CAF40	YNL288W	MRPL31	P14063	131 aa	Predicted RBP	4.51	□□□□□ -1.69
CAF40	YNL288W	VMA16	P23968	213 aa		4.51	□□□□□ -1.69
CAF40	YNL288W	YGL010W	P25338	174 aa		4.51	□□□□□ -1.69
CAF40	YNL288W	VMA21	P41806	77 aa		4.51	□□□□□ -1.69
CAF40	YNL288W	YCH1	P42937	148 aa		4.51	□□□□□ -1.69
CAF40	YNL288W	YFR035C	P43608	114 aa		4.51	□□□□□ -1.69
CAF40	YNL288W	YGR026W	P53217	278 aa		4.51	□□□□□ -1.69
CAF40	YNL288W	ATP23	P53722	227 aa		4.51	□□□□□ -1.69
CAF40	YNL288W	AGA1	P32323	725 aa		4.5	□□□□□ -1.69
CAF40	YNL288W	MIX23	P38162	196 aa		4.5	□□□□□ -1.69
CAF40	YNL288W	RPB11	P38902	120 aa		4.5	□□□□□ -1.69
CAF40	YNL288W	VHS2	P40463	436 aa		4.5	□□□□□ -1.69
CAF40	YNL288W	HHO1	P53551	258 aa		4.5	□□□□□ -1.69
CAF40	YNL288W	SGF11	Q03067	99 aa		4.5	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 26.7 ms