RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W TRI1Q05024 226 aa4.62□□□□□ -1.67
ATG4YNL223W DAD1Q12248 94 aa4.62□□□□□ -1.67
ATG4YNL223W MSN1P22148 382 aa4.62□□□□□ -1.67
ATG4YNL223W CMC1P36064 111 aa4.62□□□□□ -1.67
ATG4YNL223W FIP1P45976 327 aa4.62□□□□□ -1.67
ATG4YNL223W CUE4Q04201 117 aaPredicted RBP4.62□□□□□ -1.67
ATG4YNL223W ATG39Q06159 398 aa4.62□□□□□ -1.67
ATG4YNL223W MRPL23Q12487 163 aaPredicted RBP4.62□□□□□ -1.67
ATG4YNL223W YCR024C-BQ3E7Z8 88 aa4.62□□□□□ -1.67
ATG4YNL223W YLR342W-AQ3E810 57 aa4.62□□□□□ -1.67
ATG4YNL223W NUM1Q00402 2748 aa4.61□□□□□ -1.67
ATG4YNL223W MRP10O75012 95 aa4.61□□□□□ -1.67
ATG4YNL223W FRS1P15624 595 aaKnown RBP4.61□□□□□ -1.67
ATG4YNL223W ATG33Q06485 197 aa4.61□□□□□ -1.67
ATG4YNL223W GEP3Q08622 556 aa4.61□□□□□ -1.67
ATG4YNL223W YPR063CQ12160 140 aa4.61□□□□□ -1.67
ATG4YNL223W YDR215CQ12240 137 aa4.61□□□□□ -1.67
ATG4YNL223W RPS22BQ3E7Y3 130 aaKnown RBP4.61□□□□□ -1.67
ATG4YNL223W RPB11P38902 120 aa4.6□□□□□ -1.67
ATG4YNL223W MST28P39552 234 aa4.6□□□□□ -1.67
ATG4YNL223W SPI1P40092 148 aa4.6□□□□□ -1.67
ATG4YNL223W MST27P53176 234 aa4.6□□□□□ -1.67
ATG4YNL223W CAX4P53223 239 aa4.6□□□□□ -1.67
ATG4YNL223W DUG3P53871 357 aa4.6□□□□□ -1.67
ATG4YNL223W SEN15Q04675 128 aa4.6□□□□□ -1.67
ATG4YNL223W PRM3Q08931 133 aa4.6□□□□□ -1.67
ATG4YNL223W UTP23Q12339 254 aaKnown RBP4.6□□□□□ -1.67
ATG4YNL223W CPT1P17898 393 aa4.59□□□□□ -1.67
ATG4YNL223W PRE5P40302 234 aaKnown RBP4.59□□□□□ -1.67
ATG4YNL223W TDA4P47153 279 aa4.59□□□□□ -1.67
ATG4YNL223W SDS23P53172 527 aa4.59□□□□□ -1.67
ATG4YNL223W IZH3Q07959 543 aa4.59□□□□□ -1.67
ATG4YNL223W YOR097CQ12274 175 aaPredicted RBP4.59□□□□□ -1.67
ATG4YNL223W TMA17Q12513 150 aa4.59□□□□□ -1.67
ATG4YNL223W SEC4P07560 215 aaKnown RBP4.58□□□□□ -1.68
ATG4YNL223W YER190C-BP0CX94 160 aa4.58□□□□□ -1.68
ATG4YNL223W YEL077W-AP0CX95 160 aa4.58□□□□□ -1.68
ATG4YNL223W YGR296C-BP0CX96 160 aa4.58□□□□□ -1.68
ATG4YNL223W YPL283W-BP0CX97 160 aa4.58□□□□□ -1.68
ATG4YNL223W YPR204C-AP0CX98 160 aa4.58□□□□□ -1.68
ATG4YNL223W MDM10P18409 493 aa4.58□□□□□ -1.68
ATG4YNL223W PAU7P39545 55 aa4.58□□□□□ -1.68
ATG4YNL223W OST3P48439 350 aa4.58□□□□□ -1.68
ATG4YNL223W ARC18Q05933 178 aaKnown RBP4.58□□□□□ -1.68
ATG4YNL223W CSM4Q08955 156 aa4.58□□□□□ -1.68
ATG4YNL223W RPL12AP0CX53 165 aaKnown RBP4.57□□□□□ -1.68
ATG4YNL223W RPL12BP0CX54 165 aa4.57□□□□□ -1.68
ATG4YNL223W ZRT1P32804 376 aa4.57□□□□□ -1.68
ATG4YNL223W RPA43P46669 326 aa4.57□□□□□ -1.68
ATG4YNL223W YIP3P53633 176 aa4.57□□□□□ -1.68
ATG4YNL223W UPS3Q04006 179 aa4.57□□□□□ -1.68
ATG4YNL223W MSA1Q08471 629 aa4.57□□□□□ -1.68
ATG4YNL223W FSF1Q12029 327 aaKnown RBP4.57□□□□□ -1.68
ATG4YNL223W POM33Q12164 279 aa4.57□□□□□ -1.68
ATG4YNL223W PRM7Q12459 698 aa4.57□□□□□ -1.68
ATG4YNL223W YNL146C-AQ3E7Z1 64 aa4.57□□□□□ -1.68
ATG4YNL223W YOR011W-AQ3E807 68 aa4.57□□□□□ -1.68
ATG4YNL223W RPL23AP0CX41 137 aaKnown RBP4.56□□□□□ -1.68
ATG4YNL223W RPL23BP0CX42 137 aaKnown RBP4.56□□□□□ -1.68
ATG4YNL223W PRY2P36110 329 aa4.56□□□□□ -1.68
ATG4YNL223W LSM8P47093 109 aaKnown RBP4.56□□□□□ -1.68
ATG4YNL223W THG1P53215 237 aaKnown RBP4.56□□□□□ -1.68
ATG4YNL223W TIM22Q12328 207 aa4.56□□□□□ -1.68
ATG4YNL223W COA6Q3E846 104 aa4.56□□□□□ -1.68
ATG4YNL223W YIL134C-AQ45U18 67 aa4.56□□□□□ -1.68
ATG4YNL223W YHR212W-AP0CX91 67 aa4.56□□□□□ -1.68
ATG4YNL223W YFL068WP0CX99 160 aa4.56□□□□□ -1.68
ATG4YNL223W YLL066W-AP0CY00 160 aa4.56□□□□□ -1.68
ATG4YNL223W YLL067W-AP0CY01 160 aa4.56□□□□□ -1.68
ATG4YNL223W YHR022CP38763 256 aa4.56□□□□□ -1.68
ATG4YNL223W YDL186WP48568 277 aa4.56□□□□□ -1.68
ATG4YNL223W GTO3Q04806 366 aa4.56□□□□□ -1.68
ATG4YNL223W RRG8Q06109 277 aa4.56□□□□□ -1.68
ATG4YNL223W CCW12Q12127 133 aa4.56□□□□□ -1.68
ATG4YNL223W ERG27Q12452 347 aaKnown RBP4.56□□□□□ -1.68
ATG4YNL223W TAR1Q8TGM6 124 aa4.56□□□□□ -1.68
ATG4YNL223W RPL27AP0C2H6 136 aaKnown RBP4.55□□□□□ -1.68
ATG4YNL223W VMA16P23968 213 aa4.55□□□□□ -1.68
ATG4YNL223W YER134CP40081 178 aa4.55□□□□□ -1.68
ATG4YNL223W SIM1P40472 476 aa4.55□□□□□ -1.68
ATG4YNL223W MRPL49P40858 161 aaPredicted RBP4.55□□□□□ -1.68
ATG4YNL223W COX16P47081 118 aa4.55□□□□□ -1.68
ATG4YNL223W YJR096WP47137 282 aa4.55□□□□□ -1.68
ATG4YNL223W CGR1P53188 120 aa4.55□□□□□ -1.68
ATG4YNL223W YGR017WP53210 297 aa4.55□□□□□ -1.68
ATG4YNL223W YPL162CQ12042 273 aa4.55□□□□□ -1.68
ATG4YNL223W UTR5P32630 166 aa4.54□□□□□ -1.68
ATG4YNL223W GSP1P32835 219 aaKnown RBP4.54□□□□□ -1.68
ATG4YNL223W GSP2P32836 220 aaKnown RBP4.54□□□□□ -1.68
ATG4YNL223W MRPL11P36521 249 aaPredicted RBP4.54□□□□□ -1.68
ATG4YNL223W YHR140WP38842 239 aa4.54□□□□□ -1.68
ATG4YNL223W YER135CP40082 130 aa4.54□□□□□ -1.68
ATG4YNL223W CDC40P40968 455 aaPredicted RBP4.54□□□□□ -1.68
ATG4YNL223W BRP1P53194 125 aa4.54□□□□□ -1.68
ATG4YNL223W GPI19Q04082 140 aa4.54□□□□□ -1.68
ATG4YNL223W WIP1Q2V2P8 89 aa4.54□□□□□ -1.68
ATG4YNL223W YOL085CQ99345 113 aa4.54□□□□□ -1.68
ATG4YNL223W AGA1P32323 725 aa4.53□□□□□ -1.68
ATG4YNL223W TEM1P38987 245 aa4.53□□□□□ -1.68
ATG4YNL223W YNL200CP40165 246 aaKnown RBP4.53□□□□□ -1.68
Retrieved 100 of 5,963 RNA–protein pairs in 58.4 ms