RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	YNR048W	P53740	393 aa		4.02	□□□□□ -1.77
CAF4	YKR036C	ATP19	P81451	68 aa		4.02	□□□□□ -1.77
CAF4	YKR036C	YFH1	Q07540	174 aa		4.02	□□□□□ -1.77
CAF4	YKR036C	MSA1	Q08471	629 aa		4.02	□□□□□ -1.77
CAF4	YKR036C	TIM18	Q08749	192 aa		4.02	□□□□□ -1.77
CAF4	YKR036C	FAS1	P07149	2051 aa	Known RBP	4.02	□□□□□ -1.77
CAF4	YKR036C	YMR316C-A	I2HB70	103 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	YLR302C	O13544	120 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	MRPL20	P22354	195 aa	Predicted RBP	4.01	□□□□□ -1.77
CAF4	YKR036C	YKR041W	P36134	250 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	SFT2	P38166	215 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	CCS1	P40202	249 aa	Known RBP	4.01	□□□□□ -1.77
CAF4	YKR036C	ATF1	P40353	525 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	MRX11	Q03079	207 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	HPA2	Q06592	156 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	GEP3	Q08622	556 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	YOR292C	Q08743	309 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	YOR192C-C	Q3E736	78 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	YLR415C	O13578	112 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	YPS1	P32329	569 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	FZF1	P32805	299 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	YHR173C	P38864	112 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	MST28	P39552	234 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	CWP2	P43497	92 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	YDL186W	P48568	277 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	YDR042C	Q03205	200 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	API2	Q04413	109 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	IRC25	Q07951	179 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	YAL063C-A	Q3E791	96 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	HTL1	Q9URQ5	78 aa		4.01	□□□□□ -1.77
CAF4	YKR036C	YER039C-A	P0CD97	72 aa		4	□□□□□ -1.77
CAF4	YKR036C	RPS2	P25443	254 aa	Known RBP	4	□□□□□ -1.77
CAF4	YKR036C	YJL193W	P39542	402 aa		4	□□□□□ -1.77
CAF4	YKR036C	YER181C	P40097	107 aa		4	□□□□□ -1.77
CAF4	YKR036C	YPL073C	P40323	161 aa		4	□□□□□ -1.77
CAF4	YKR036C	HUA1	P40325	198 aa		4	□□□□□ -1.77
CAF4	YKR036C	YPI1	P43587	155 aa		4	□□□□□ -1.77
CAF4	YKR036C	YIL014C-A	Q02598	104 aa		4	□□□□□ -1.77
CAF4	YKR036C	RPL27B	P0C2H7	136 aa	Known RBP	3.99	□□□□□ -1.77
CAF4	YKR036C	DAT1	P13483	248 aa	Known RBP	3.99	□□□□□ -1.77
CAF4	YKR036C	MDM10	P18409	493 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	SPC29	P33419	253 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	APS1	P35181	156 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	CSH1	P38287	376 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	SHR5	P41912	237 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	PRY1	P47032	299 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	YGR039W	P53225	103 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	YOR186W	Q08560	144 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	FCY1	Q12178	158 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	YPS3	Q12303	508 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	YDR119W-A	Q2V2P9	66 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	RPS28B	P0C0X0	67 aa	Known RBP	3.99	□□□□□ -1.77
CAF4	YKR036C	MRPL31	P14063	131 aa	Predicted RBP	3.99	□□□□□ -1.77
CAF4	YKR036C	RPL30	P14120	105 aa	Known RBP	3.99	□□□□□ -1.77
CAF4	YKR036C	RPA12	P32529	125 aa	Known RBP	3.99	□□□□□ -1.77
CAF4	YKR036C	MRPS5	P33759	307 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	HNT2	P49775	206 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	UBC7	Q02159	165 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	YDR209C	Q03480	137 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	RAF1	Q06891	181 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	YOR376W	Q08900	122 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	RFM1	Q12192	310 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	MPD1	Q12404	318 aa	Known RBP	3.99	□□□□□ -1.77
CAF4	YKR036C	RPS28A	Q3E7X9	67 aa	Predicted RBP	3.99	□□□□□ -1.77
CAF4	YKR036C	YFL041W-A	Q3E817	63 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	YHR214C-E	Q8TGK0	99 aa		3.99	□□□□□ -1.77
CAF4	YKR036C	MRS3	P10566	314 aa		3.98	□□□□□ -1.77
CAF4	YKR036C	MID2	P36027	376 aa		3.98	□□□□□ -1.77
CAF4	YKR036C	YFR045W	P43617	309 aa		3.98	□□□□□ -1.77
CAF4	YKR036C	RAV2	Q03956	351 aa		3.98	□□□□□ -1.77
CAF4	YKR036C	RPL27A	P0C2H6	136 aa	Known RBP	3.97	□□□□□ -1.77
CAF4	YKR036C	RPB10	P22139	70 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	VMA11	P32842	164 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	YER085C	P40058	173 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	YIL059C	P40520	121 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	UBC5	P15732	148 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	YCR085W	P25650	117 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	TIR2	P33890	251 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	PET8	P38921	284 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	RPS26A	P39938	119 aa	Known RBP	3.97	□□□□□ -1.77
CAF4	YKR036C	RPS26B	P39939	119 aa	Known RBP	3.97	□□□□□ -1.77
CAF4	YKR036C	LST8	P41318	303 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	YIP1	P53039	248 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	RHO5	P53879	331 aa	Known RBP	3.97	□□□□□ -1.77
CAF4	YKR036C	FIT2	Q08906	153 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	USB1	Q12208	290 aa	Known RBP	3.97	□□□□□ -1.77
CAF4	YKR036C	BOL1	Q3E793	110 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	YOR032W-A	Q8TGS1	66 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	ENV10	Q99382	181 aa		3.97	□□□□□ -1.77
CAF4	YKR036C	RAD6	P06104	172 aa		3.96	□□□□□ -1.78
CAF4	YKR036C	YCL042W	P25572	119 aa		3.96	□□□□□ -1.78
CAF4	YKR036C	IRC19	Q07843	230 aa		3.96	□□□□□ -1.78
CAF4	YKR036C	YRA1	Q12159	226 aa	Known RBP	3.96	□□□□□ -1.78
CAF4	YKR036C	YBR121C-A	P0C5L4	52 aa		3.95	□□□□□ -1.78
CAF4	YKR036C	YEL067C	P39978	195 aa		3.95	□□□□□ -1.78
CAF4	YKR036C	YJR115W	P47152	169 aa		3.95	□□□□□ -1.78
CAF4	YKR036C	TOM7	P53507	60 aa		3.95	□□□□□ -1.78
CAF4	YKR036C	NCE103	P53615	221 aa		3.95	□□□□□ -1.78
CAF4	YKR036C	YNR077C	P53758	84 aa		3.95	□□□□□ -1.78
CAF4	YKR036C	COX12	Q01519	83 aa		3.95	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms