RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W PKR1Q03880 122 aaKnown RBP3.38□□□□□ -1.87
PRP40YKL012W GPI11Q06636 219 aa3.38□□□□□ -1.87
PRP40YKL012W YPR013CQ12145 317 aa3.38□□□□□ -1.87
PRP40YKL012W ATP5P09457 212 aa3.37□□□□□ -1.87
PRP40YKL012W TMA19P35691 167 aaKnown RBP3.37□□□□□ -1.87
PRP40YKL012W RAD6P06104 172 aa3.36□□□□□ -1.87
PRP40YKL012W YEL028WP39989 153 aa3.36□□□□□ -1.87
PRP40YKL012W HHT1P61830 136 aa3.36□□□□□ -1.87
PRP40YKL012W PST2Q12335 198 aaKnown RBP3.36□□□□□ -1.87
PRP40YKL012W YKL018C-AQ3E7A7 99 aa3.36□□□□□ -1.87
PRP40YKL012W RIB3Q99258 208 aa3.36□□□□□ -1.87
PRP40YKL012W DAD4P69851 72 aa3.35□□□□□ -1.87
PRP40YKL012W SWC7Q06707 132 aa3.35□□□□□ -1.87
PRP40YKL012W GTT1P40582 234 aa3.35□□□□□ -1.87
PRP40YKL012W SYM1Q06563 197 aa3.35□□□□□ -1.87
PRP40YKL012W PRP11Q07350 266 aaPredicted RBP3.35□□□□□ -1.87
PRP40YKL012W YGL194C-AQ2V2P6 80 aa3.35□□□□□ -1.87
PRP40YKL012W YKR045CP36138 183 aa3.34□□□□□ -1.87
PRP40YKL012W AIM36Q03798 255 aa3.34□□□□□ -1.87
PRP40YKL012W MHF2Q3E829 80 aa3.34□□□□□ -1.87
PRP40YKL012W SUS1Q6WNK7 96 aa3.34□□□□□ -1.87
PRP40YKL012W FIP1P45976 327 aa3.33□□□□□ -1.88
PRP40YKL012W RAV2Q03956 351 aa3.33□□□□□ -1.88
PRP40YKL012W YOR015WQ12169 119 aa3.33□□□□□ -1.88
PRP40YKL012W YOR381W-AQ3E804 55 aa3.33□□□□□ -1.88
PRP40YKL012W FLO9P39712 1322 aa3.33□□□□□ -1.88
PRP40YKL012W THG1P53215 237 aaKnown RBP3.33□□□□□ -1.88
PRP40YKL012W ARL3Q02804 198 aa3.33□□□□□ -1.88
PRP40YKL012W SPS2P08459 502 aa3.32□□□□□ -1.88
PRP40YKL012W YCR099CP25657 155 aa3.32□□□□□ -1.88
PRP40YKL012W YHL018WP38744 120 aaPredicted RBP3.32□□□□□ -1.88
PRP40YKL012W RGI1P40043 161 aaPredicted RBP3.32□□□□□ -1.88
PRP40YKL012W YER135CP40082 130 aa3.32□□□□□ -1.88
PRP40YKL012W YJL218WP40892 196 aaKnown RBP3.32□□□□□ -1.88
PRP40YKL012W RPS1BP23248 255 aaKnown RBP3.31□□□□□ -1.88
PRP40YKL012W SRB6P32570 121 aa3.31□□□□□ -1.88
PRP40YKL012W GSP2P32836 220 aaKnown RBP3.31□□□□□ -1.88
PRP40YKL012W RPS1AP33442 255 aaKnown RBP3.31□□□□□ -1.88
PRP40YKL012W SFK1P35735 353 aa3.31□□□□□ -1.88
PRP40YKL012W YEL073CP39974 107 aa3.31□□□□□ -1.88
PRP40YKL012W MPC1P53157 130 aaKnown RBP3.31□□□□□ -1.88
PRP40YKL012W PIR1Q03178 341 aa3.31□□□□□ -1.88
PRP40YKL012W NHP10Q03435 203 aa3.31□□□□□ -1.88
PRP40YKL012W ZEO1Q08245 113 aa3.31□□□□□ -1.88
PRP40YKL012W YOL131WQ08270 108 aa3.31□□□□□ -1.88
PRP40YKL012W COX8P04039 78 aa3.3□□□□□ -1.88
PRP40YKL012W UPS2P35200 230 aa3.3□□□□□ -1.88
PRP40YKL012W HPA3P39979 161 aa3.3□□□□□ -1.88
PRP40YKL012W HHO1P53551 258 aa3.3□□□□□ -1.88
PRP40YKL012W RIM9Q04734 239 aa3.3□□□□□ -1.88
PRP40YKL012W YBR219CP38317 127 aa3.3□□□□□ -1.88
PRP40YKL012W PCC1Q3E833 88 aa3.3□□□□□ -1.88
PRP40YKL012W HAP2P06774 265 aa3.29□□□□□ -1.88
PRP40YKL012W YFR010W-AP0C5N0 62 aa3.29□□□□□ -1.88
PRP40YKL012W GNA1P43577 159 aaPredicted RBP3.29□□□□□ -1.88
PRP40YKL012W YAE1P47118 141 aaPredicted RBP3.29□□□□□ -1.88
PRP40YKL012W SNN1P48232 102 aa3.29□□□□□ -1.88
PRP40YKL012W IGO1P53897 168 aa3.29□□□□□ -1.88
PRP40YKL012W YDR102CQ03864 110 aa3.29□□□□□ -1.88
PRP40YKL012W YPD1Q07688 167 aa3.29□□□□□ -1.88
PRP40YKL012W SCP1Q08873 200 aa3.29□□□□□ -1.88
PRP40YKL012W YCL001W-BQ96VH2 84 aa3.29□□□□□ -1.88
PRP40YKL012W SLH1P53327 1967 aaKnown RBP3.29□□□□□ -1.88
PRP40YKL012W MSB2P32334 1306 aa3.28□□□□□ -1.88
PRP40YKL012W STT4P37297 1900 aa3.28□□□□□ -1.88
PRP40YKL012W MDM35O60200 86 aa3.28□□□□□ -1.88
PRP40YKL012W HTD2P38790 280 aaKnown RBP3.28□□□□□ -1.88
PRP40YKL012W MPM1P40364 252 aa3.28□□□□□ -1.88
PRP40YKL012W NSE4P43124 402 aa3.28□□□□□ -1.88
PRP40YKL012W YCL001W-AP87012 153 aa3.28□□□□□ -1.88
PRP40YKL012W YHR007C-AQ07074 71 aa3.28□□□□□ -1.88
PRP40YKL012W LDB18Q07887 179 aa3.28□□□□□ -1.88
PRP40YKL012W LHP1P33399 275 aaKnown RBP3.28□□□□□ -1.89
PRP40YKL012W YRA2P36036 203 aaKnown RBP RIP-Chip data3.28□□□□□ -1.89not detected
PRP40YKL012W YER181CP40097 107 aa3.28□□□□□ -1.89
PRP40YKL012W SWM2P40342 146 aa3.28□□□□□ -1.89
PRP40YKL012W YJR015WP47090 510 aa3.28□□□□□ -1.89
PRP40YKL012W YLR162WQ06235 118 aa3.28□□□□□ -1.89
PRP40YKL012W YDR524C-BQ3E6R4 66 aa3.28□□□□□ -1.89
PRP40YKL012W PRS3P38689 320 aaKnown RBP3.27□□□□□ -1.89
PRP40YKL012W CCC1P47818 322 aa3.27□□□□□ -1.89
PRP40YKL012W YGL193CP53097 103 aa3.27□□□□□ -1.89
PRP40YKL012W ERV14P53173 138 aa3.27□□□□□ -1.89
PRP40YKL012W YDR391CQ04170 232 aa3.27□□□□□ -1.89
PRP40YKL012W UPS1Q05776 175 aa3.27□□□□□ -1.89
PRP40YKL012W ATG41Q12048 136 aa3.27□□□□□ -1.89
PRP40YKL012W PAC10P48363 199 aa3.26□□□□□ -1.89
PRP40YKL012W LIP1Q03579 150 aa3.26□□□□□ -1.89
PRP40YKL012W YHP1Q04116 353 aa3.26□□□□□ -1.89
PRP40YKL012W FIT2Q08906 153 aa3.26□□□□□ -1.89
PRP40YKL012W VMA9Q3E7B6 73 aa3.26□□□□□ -1.89
PRP40YKL012W SSS1P35179 80 aa3.25□□□□□ -1.89
PRP40YKL012W YGR201CP42936 225 aa3.25□□□□□ -1.89
PRP40YKL012W UPS3Q04006 179 aa3.25□□□□□ -1.89
PRP40YKL012W MRPL44P19956 98 aa3.25□□□□□ -1.89
PRP40YKL012W EMP24P32803 203 aaKnown RBP3.25□□□□□ -1.89
PRP40YKL012W YMR320WQ04897 101 aa3.25□□□□□ -1.89
PRP40YKL012W CSI2Q08054 341 aa3.25□□□□□ -1.89
PRP40YKL012W SPC3Q12133 184 aa3.25□□□□□ -1.89
PRP40YKL012W ATG8P38182 117 aaRIP-Chip data3.24□□□□□ -1.89not detected
Retrieved 100 of 5,963 RNA–protein pairs in 25.3 ms