RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W CCW12Q12127 133 aa1.46□□□□□ -2.18
UPF3YGR072W RIF1P29539 1916 aa1.46□□□□□ -2.18
UPF3YGR072W ANB1P19211 157 aa1.45□□□□□ -2.18
UPF3YGR072W QCR10P37299 77 aa1.45□□□□□ -2.18
UPF3YGR072W PHS1P40857 217 aa1.45□□□□□ -2.18
UPF3YGR072W TIM8P57744 87 aa1.45□□□□□ -2.18
UPF3YGR072W TVP18Q04767 167 aa1.45□□□□□ -2.18
UPF3YGR072W IRC21Q04772 201 aa1.45□□□□□ -2.18
UPF3YGR072W YPL067CQ02754 198 aa1.44□□□□□ -2.18
UPF3YGR072W SDH7Q04401 133 aa1.44□□□□□ -2.18
UPF3YGR072W LCL2Q08045 131 aa1.44□□□□□ -2.18
UPF3YGR072W YOR072WQ08486 104 aa1.44□□□□□ -2.18
UPF3YGR072W SLO1Q3E784 85 aa1.44□□□□□ -2.18
UPF3YGR072W RAD50P12753 1312 aa1.43□□□□□ -2.18
UPF3YGR072W YGL014C-AP0C5N1 53 aa1.43□□□□□ -2.18
UPF3YGR072W FUN14P18411 198 aa1.43□□□□□ -2.18
UPF3YGR072W HYM1P32464 399 aa1.43□□□□□ -2.18
UPF3YGR072W HSP10P38910 106 aa1.43□□□□□ -2.18
UPF3YGR072W RPL37AP49166 88 aaKnown RBP1.43□□□□□ -2.18
UPF3YGR072W BRP1P53194 125 aa1.43□□□□□ -2.18
UPF3YGR072W YNL122CP53921 115 aaPredicted RBP1.43□□□□□ -2.18
UPF3YGR072W HAP2P06774 265 aa1.42□□□□□ -2.18
UPF3YGR072W PFY1P07274 126 aa1.42□□□□□ -2.18
UPF3YGR072W HAP3P13434 144 aa1.42□□□□□ -2.18
UPF3YGR072W YCR001WP25347 104 aa1.42□□□□□ -2.18
UPF3YGR072W YAL064WP39711 94 aa1.42□□□□□ -2.18
UPF3YGR072W SFT1P43682 97 aa1.42□□□□□ -2.18
UPF3YGR072W YGL149WP53116 101 aa1.42□□□□□ -2.18
UPF3YGR072W SEN15Q04675 128 aa1.42□□□□□ -2.18
UPF3YGR072W YHR213WP0CI67 198 aa1.41□□□□□ -2.18
UPF3YGR072W NMT1P14743 455 aa1.41□□□□□ -2.18
UPF3YGR072W MRPL11P36521 249 aaPredicted RBP1.41□□□□□ -2.18
UPF3YGR072W YJL009WP47078 108 aa1.41□□□□□ -2.18
UPF3YGR072W YMR122CQ03879 124 aa1.41□□□□□ -2.18
UPF3YGR072W KTI11Q3E840 82 aa1.41□□□□□ -2.18
UPF3YGR072W PAU21P0CE86 164 aa1.4□□□□□ -2.19
UPF3YGR072W PAU22P0CE87 164 aa1.4□□□□□ -2.19
UPF3YGR072W MRP49P32388 137 aa1.4□□□□□ -2.19
UPF3YGR072W UGX2P32772 223 aa1.4□□□□□ -2.19
UPF3YGR072W VMA7P39111 118 aa1.4□□□□□ -2.19
UPF3YGR072W LST8P41318 303 aa1.4□□□□□ -2.19
UPF3YGR072W HSL1P34244 1518 aa1.4□□□□□ -2.19
UPF3YGR072W SAE3P89114 91 aa1.39□□□□□ -2.19
UPF3YGR072W RPS22AP0C0W1 130 aaKnown RBP1.38□□□□□ -2.19
UPF3YGR072W YOL013W-AP0C272 63 aaPredicted RBP1.38□□□□□ -2.19
UPF3YGR072W AIM11P87275 137 aa1.38□□□□□ -2.19
UPF3YGR072W RPS22BQ3E7Y3 130 aaKnown RBP1.38□□□□□ -2.19
UPF3YGR072W UTP11P34247 250 aaPredicted RBP1.37□□□□□ -2.19
UPF3YGR072W TRS20P38334 175 aa1.37□□□□□ -2.19
UPF3YGR072W GAT4P40569 121 aa1.37□□□□□ -2.19
UPF3YGR072W ERV14P53173 138 aa1.37□□□□□ -2.19
UPF3YGR072W MGR2Q02889 113 aa1.37□□□□□ -2.19
UPF3YGR072W YLR296WQ05898 108 aa1.37□□□□□ -2.19
UPF3YGR072W CDC39P25655 2108 aaKnown RBP1.36□□□□□ -2.19
UPF3YGR072W RPL36BO14455 100 aaKnown RBP1.36□□□□□ -2.19
UPF3YGR072W RPL36AP05745 100 aaPredicted RBP1.36□□□□□ -2.19
UPF3YGR072W RPL40AP0CH08 128 aaKnown RBP1.36□□□□□ -2.19
UPF3YGR072W RPL40BP0CH09 128 aaKnown RBP1.36□□□□□ -2.19
UPF3YGR072W COA4Q05809 96 aa1.36□□□□□ -2.19
UPF3YGR072W GTT2Q12390 233 aa1.36□□□□□ -2.19
UPF3YGR072W SLH1P53327 1967 aaKnown RBP1.36□□□□□ -2.19
UPF3YGR072W SEC59P20048 519 aa1.35□□□□□ -2.19
UPF3YGR072W FRQ1Q06389 190 aa1.35□□□□□ -2.19
UPF3YGR072W LDB18Q07887 179 aa1.35□□□□□ -2.19
UPF3YGR072W COA6Q3E846 104 aa1.35□□□□□ -2.19
UPF3YGR072W MED11Q99278 115 aa1.35□□□□□ -2.19
UPF3YGR072W ROM2P51862 1356 aaKnown RBP1.34□□□□□ -2.19
UPF3YGR072W MYO2P19524 1574 aaKnown RBP1.34□□□□□ -2.19
UPF3YGR072W GSP1P32835 219 aaKnown RBP1.34□□□□□ -2.19
UPF3YGR072W PRM3Q08931 133 aa1.34□□□□□ -2.19
UPF3YGR072W YLR118CQ12354 227 aa1.34□□□□□ -2.19
UPF3YGR072W YHR213W-BQ8TGK1 99 aa1.34□□□□□ -2.19
UPF3YGR072W RTC6O14464 93 aa1.33□□□□□ -2.2
UPF3YGR072W AIM18P38884 321 aa1.33□□□□□ -2.2
UPF3YGR072W RPL37BP51402 88 aaKnown RBP1.33□□□□□ -2.2
UPF3YGR072W APS2Q00381 147 aa1.33□□□□□ -2.2
UPF3YGR072W AIM36Q03798 255 aa1.33□□□□□ -2.2
UPF3YGR072W YLR099W-AQ3E798 87 aa1.32□□□□□ -2.2
UPF3YGR072W SNT2P53127 1403 aa1.32□□□□□ -2.2
UPF3YGR072W YKL044WP36092 106 aa1.31□□□□□ -2.2
UPF3YGR072W RPB11P38902 120 aa1.31□□□□□ -2.2
UPF3YGR072W FCF2Q12035 217 aaPredicted RBP1.31□□□□□ -2.2
UPF3YGR072W WIP1Q2V2P8 89 aa1.31□□□□□ -2.2
UPF3YGR072W HHY1P39982 102 aa1.3□□□□□ -2.2
UPF3YGR072W GPI19Q04082 140 aa1.3□□□□□ -2.2
UPF3YGR072W HPA2Q06592 156 aa1.3□□□□□ -2.2
UPF3YGR072W YSF3P0C074 85 aaPredicted RBP1.29□□□□□ -2.2
UPF3YGR072W SPC24Q04477 213 aa1.29□□□□□ -2.2
UPF3YGR072W SNF11P38956 169 aa1.28□□□□□ -2.2
UPF3YGR072W YIR021W-AQ3E739 70 aa1.28□□□□□ -2.2
UPF3YGR072W TRM732Q03496 1420 aa1.28□□□□□ -2.2
UPF3YGR072W YCR099CP25657 155 aa1.27□□□□□ -2.21
UPF3YGR072W AIM4P38305 123 aaPredicted RBP1.27□□□□□ -2.21
UPF3YGR072W MIC27P50945 234 aa1.27□□□□□ -2.21
UPF3YGR072W FIT3Q08907 204 aa1.27□□□□□ -2.21
UPF3YGR072W RPO41P13433 1351 aaKnown RBP1.26□□□□□ -2.21
UPF3YGR072W YER188C-AP0C0V2 99 aa1.26□□□□□ -2.21
UPF3YGR072W YJL197C-AP0C5P0 93 aa1.26□□□□□ -2.21
UPF3YGR072W YBR013CP38215 129 aa1.26□□□□□ -2.21
UPF3YGR072W MVB12P42939 101 aa1.26□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 83.3 ms