RNA–Protein interactions for RNA: YFR050C

PRE4, Transcript of Beta 7 subunit of the 20S proteasome, yeast

Gene PRE4, Length 801 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE4	YFR050C	YBR285W	P38354	144 aa		0.72	□□□□□ -2.29
PRE4	YFR050C	EMC5	P40540	141 aa		0.72	□□□□□ -2.29
PRE4	YFR050C	HYR1	P40581	163 aa	Known RBP	0.72	□□□□□ -2.29
PRE4	YFR050C	ERJ5	P43613	295 aa	Predicted RBP	0.72	□□□□□ -2.29
PRE4	YFR050C	ABF2	Q02486	183 aa		0.72	□□□□□ -2.29
PRE4	YFR050C	YMD8	Q03697	442 aa		0.72	□□□□□ -2.29
PRE4	YFR050C	RPL22B	P56628	122 aa	Known RBP	0.71	□□□□□ -2.3
PRE4	YFR050C	YML108W	Q03759	105 aa		0.71	□□□□□ -2.3
PRE4	YFR050C	YLR194C	Q05777	254 aa		0.71	□□□□□ -2.3
PRE4	YFR050C	RRT7	Q07829	113 aa		0.71	□□□□□ -2.3
PRE4	YFR050C	PAM18	Q07914	168 aa		0.71	□□□□□ -2.3
PRE4	YFR050C	QCR8	P08525	94 aa		0.7	□□□□□ -2.3
PRE4	YFR050C	YUH1	P35127	236 aa		0.7	□□□□□ -2.3
PRE4	YFR050C	YNL217W	P40152	326 aa		0.7	□□□□□ -2.3
PRE4	YFR050C	HUA1	P40325	198 aa		0.7	□□□□□ -2.3
PRE4	YFR050C	DLS1	P40366	167 aa		0.7	□□□□□ -2.3
PRE4	YFR050C	RRT8	Q08219	342 aa		0.7	□□□□□ -2.3
PRE4	YFR050C	YCR101C	P25607	182 aa		0.69	□□□□□ -2.3
PRE4	YFR050C	ARO7	P32178	256 aa		0.69	□□□□□ -2.3
PRE4	YFR050C	YMR320W	Q04897	101 aa		0.69	□□□□□ -2.3
PRE4	YFR050C	KSH1	Q8TGJ3	72 aa		0.69	□□□□□ -2.3
PRE4	YFR050C	RPL27B	P0C2H7	136 aa	Known RBP	0.68	□□□□□ -2.3
PRE4	YFR050C	YMR31	P19955	123 aa		0.68	□□□□□ -2.3
PRE4	YFR050C	MRPL25	P23369	157 aa		0.68	□□□□□ -2.3
PRE4	YFR050C	NUF2	P33895	451 aa		0.68	□□□□□ -2.3
PRE4	YFR050C	PEX17	P40155	199 aa		0.68	□□□□□ -2.3
PRE4	YFR050C	ARP3	P47117	449 aa	Known RBP	0.68	□□□□□ -2.3
PRE4	YFR050C	NQM1	P53228	333 aa	Predicted RBP	0.68	□□□□□ -2.3
PRE4	YFR050C	SNA2	P56508	79 aa		0.68	□□□□□ -2.3
PRE4	YFR050C	SNZ1	Q03148	297 aa		0.68	□□□□□ -2.3
PRE4	YFR050C	YLR053C	Q12026	108 aa		0.68	□□□□□ -2.3
PRE4	YFR050C	MED4	Q12343	284 aa		0.68	□□□□□ -2.3
PRE4	YFR050C	RPB7	P34087	171 aa		0.67	□□□□□ -2.3
PRE4	YFR050C	RRT1	P38192	103 aa		0.67	□□□□□ -2.3
PRE4	YFR050C	MTW1	P39731	289 aa		0.67	□□□□□ -2.3
PRE4	YFR050C	YOL160W	Q08321	113 aa		0.67	□□□□□ -2.3
PRE4	YFR050C	ATG31	Q12421	196 aa		0.67	□□□□□ -2.3
PRE4	YFR050C	LSO2	Q3E772	92 aa	Known RBP	0.67	□□□□□ -2.3
PRE4	YFR050C	YHR139C-A	O13536	103 aa		0.66	□□□□□ -2.3
PRE4	YFR050C	CDC10	P25342	322 aa	Known RBP	0.66	□□□□□ -2.3
PRE4	YFR050C	MPM1	P40364	252 aa		0.66	□□□□□ -2.3
PRE4	YFR050C	YRB2	P40517	327 aa		0.66	□□□□□ -2.3
PRE4	YFR050C	PGA1	P53896	198 aa		0.66	□□□□□ -2.3
PRE4	YFR050C	ANT1	Q06497	328 aa		0.66	□□□□□ -2.3
PRE4	YFR050C	MRPL28	P36527	147 aa		0.65	□□□□□ -2.31
PRE4	YFR050C	RPS20	P38701	121 aa	Known RBP	0.65	□□□□□ -2.31
PRE4	YFR050C	YNR077C	P53758	84 aa		0.65	□□□□□ -2.31
PRE4	YFR050C	DID2	P69771	204 aa		0.65	□□□□□ -2.31
PRE4	YFR050C	YMR315W	Q04869	349 aa	Known RBP	0.65	□□□□□ -2.31
PRE4	YFR050C	RAD28	Q12021	506 aa		0.65	□□□□□ -2.31
PRE4	YFR050C	CCW12	Q12127	133 aa		0.65	□□□□□ -2.31
PRE4	YFR050C	VAR1	P02381	398 aa		0.64	□□□□□ -2.31
PRE4	YFR050C	YCR016W	P25617	290 aa	Known RBP	0.64	□□□□□ -2.31
PRE4	YFR050C	TRR1	P29509	319 aa	Known RBP	0.64	□□□□□ -2.31
PRE4	YFR050C	ASF2	P32448	525 aa	Predicted RBP	0.64	□□□□□ -2.31
PRE4	YFR050C	SNC2	P33328	115 aa		0.64	□□□□□ -2.31
PRE4	YFR050C	RPL14A	P36105	138 aa	Known RBP	0.64	□□□□□ -2.31
PRE4	YFR050C	UMP1	P38293	148 aa		0.64	□□□□□ -2.31
PRE4	YFR050C	RPL14B	P38754	138 aa	Known RBP	0.64	□□□□□ -2.31
PRE4	YFR050C	FMC1	P40491	155 aa		0.64	□□□□□ -2.31
PRE4	YFR050C	DOC1	P53068	250 aa		0.64	□□□□□ -2.31
PRE4	YFR050C	PRM8	P53174	237 aa		0.64	□□□□□ -2.31
PRE4	YFR050C	RRP17	Q04031	235 aa	Predicted RBP	0.64	□□□□□ -2.31
PRE4	YFR050C	FYV12	Q08559	129 aa		0.64	□□□□□ -2.31
PRE4	YFR050C	TSC3	Q3E790	80 aa		0.64	□□□□□ -2.31
PRE4	YFR050C	URA6	P15700	204 aa		0.63	□□□□□ -2.31
PRE4	YFR050C	NTF2	P33331	125 aa	Known RBP	0.63	□□□□□ -2.31
PRE4	YFR050C	HTD2	P38790	280 aa	Known RBP	0.63	□□□□□ -2.31
PRE4	YFR050C	PDS1	P40316	373 aa	Predicted RBP	0.63	□□□□□ -2.31
PRE4	YFR050C	UBC7	Q02159	165 aa		0.63	□□□□□ -2.31
PRE4	YFR050C	YMR253C	Q04835	414 aa		0.63	□□□□□ -2.31
PRE4	YFR050C	YHR213W	P0CI67	198 aa		0.62	□□□□□ -2.31
PRE4	YFR050C	YBR209W	P38311	105 aa		0.62	□□□□□ -2.31
PRE4	YFR050C	LIA1	P47120	325 aa	Known RBP	0.62	□□□□□ -2.31
PRE4	YFR050C	CUS2	P53830	285 aa	Predicted RBP	0.62	□□□□□ -2.31
PRE4	YFR050C	TDA8	Q6B2U8	126 aa		0.62	□□□□□ -2.31
PRE4	YFR050C	YPR010C-A	A5Z2X5	72 aa		0.61	□□□□□ -2.31
PRE4	YFR050C	MATALPHA1	P0CY06	175 aa		0.61	□□□□□ -2.31
PRE4	YFR050C	HMLALPHA1	P0CY07	175 aa		0.61	□□□□□ -2.31
PRE4	YFR050C	GVP36	P40531	326 aa	Known RBP	0.61	□□□□□ -2.31
PRE4	YFR050C	BXI1	P48558	297 aa		0.61	□□□□□ -2.31
PRE4	YFR050C	RPL37A	P49166	88 aa	Known RBP	0.61	□□□□□ -2.31
PRE4	YFR050C	MGA1	P53050	456 aa		0.61	□□□□□ -2.31
PRE4	YFR050C	ELP6	Q04868	273 aa		0.61	□□□□□ -2.31
PRE4	YFR050C	FIT2	Q08906	153 aa		0.61	□□□□□ -2.31
PRE4	YFR050C	FSF1	Q12029	327 aa	Known RBP	0.61	□□□□□ -2.31
PRE4	YFR050C	APS1	P35181	156 aa		0.6	□□□□□ -2.31
PRE4	YFR050C	PDX3	P38075	228 aa	Known RBP	0.6	□□□□□ -2.31
PRE4	YFR050C	GNA1	P43577	159 aa	Predicted RBP	0.6	□□□□□ -2.31
PRE4	YFR050C	YAE1	P47118	141 aa	Predicted RBP	0.6	□□□□□ -2.31
PRE4	YFR050C	KNH1	P50112	268 aa		0.6	□□□□□ -2.31
PRE4	YFR050C	POP3	P53833	195 aa	Predicted RBP	0.6	□□□□□ -2.31
PRE4	YFR050C	RPL28	P02406	149 aa	Known RBP	0.59	□□□□□ -2.31
PRE4	YFR050C	FAR7	P43592	221 aa		0.59	□□□□□ -2.31
PRE4	YFR050C	IMP2	P46972	177 aa		0.59	□□□□□ -2.31
PRE4	YFR050C	YNL122C	P53921	115 aa	Predicted RBP	0.59	□□□□□ -2.31
PRE4	YFR050C	YMR007W	Q03675	126 aa		0.59	□□□□□ -2.31
PRE4	YFR050C	CUE4	Q04201	117 aa	Predicted RBP	0.59	□□□□□ -2.31
PRE4	YFR050C	YLR236C	A0A023PZG4	107 aa		0.58	□□□□□ -2.32
PRE4	YFR050C	URA5	P13298	226 aa	Known RBP	0.58	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 63.9 ms