RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS54	YDR027C	DIG2	Q03373	323 aa	Known RBP	0.83	□□□□□ -2.28
VPS54	YDR027C	TVP18	Q04767	167 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	SWC7	Q06707	132 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	ARO7	P32178	256 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	FZF1	P32805	299 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	SNC2	P33328	115 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YET1	P35723	206 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	RPS20	P38701	121 aa	Known RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	NSE4	P43124	402 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	TDA4	P47153	279 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	TTI2	P47168	421 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	SPG1	P50088	95 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	SOL1	P50278	321 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YNL140C	P53910	189 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YNL033W	P53964	284 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YNL019C	P53975	284 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	HPT1	Q04178	221 aa	Known RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	CNL1	Q06333	122 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	NAT3	Q06504	195 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YPR174C	Q06616	221 aa	Predicted RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	ZEO1	Q08245	113 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	FSF1	Q12029	327 aa	Known RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	YOR304C-A	O14468	76 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YCR023C	P25351	611 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YCR101C	P25607	182 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	PTC1	P35182	281 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.82	□□□□□ -2.28	not detected
VPS54	YDR027C	YBR090C	P38253	122 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YNL217W	P40152	326 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YIR020C	P40575	100 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	GTT1	P40582	234 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	ERJ5	P43613	295 aa	Predicted RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	YAE1	P47118	141 aa	Predicted RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	RBL2	P48606	106 aa	Known RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	ERG25	P53045	309 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YGR039W	P53225	103 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	NUP49	Q02199	472 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YMR099C	Q03161	297 aa	Known RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	RCE1	Q03530	315 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	NKP2	Q06162	153 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	LDB18	Q07887	179 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YCL001W-B	Q96VH2	84 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	ATG40	Q99325	256 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	POR1	P04840	283 aa	Known RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	YGL041W-A	P0C5N3	154 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	AHC2	P25649	128 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	MRP49	P32388	137 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.82	□□□□□ -2.28	not detected
VPS54	YDR027C	ETR1	P38071	380 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	SVP26	P38869	228 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YEA6	P39953	335 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	VTC1	P40046	129 aa	RIP-Chip data	0.82	□□□□□ -2.28	not detected
VPS54	YDR027C	SWM2	P40342	146 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YFL019C	P43576	117 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	GPI2	P46961	280 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	RPS12	P48589	143 aa	Known RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	YGL193C	P53097	103 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	MPA43	P53583	542 aa	Predicted RBP	0.82	□□□□□ -2.28
VPS54	YDR027C	RCF2	P53721	224 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	CSN9	Q03981	162 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	UPS1	Q05776	175 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YNL277W-A	Q3E7Z0	62 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YML100W-A	Q8TGT0	57 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	ODC2	Q99297	307 aa		0.82	□□□□□ -2.28
VPS54	YDR027C	YAR023C	D6VPM8	179 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	PRE1	P22141	198 aa	Known RBP	0.81	□□□□□ -2.28
VPS54	YDR027C	SPO13	P23624	291 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	SRP21	P32342	167 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	APQ12	P40532	138 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	GLC8	P41818	229 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	YFR054C	P43622	192 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	RIM9	Q04734	239 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	SML1	Q04964	104 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	SHH4	Q06236	168 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	RDI1	Q12434	202 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	TIR1	P10863	254 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	PHO85	P17157	305 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	PHO13	P19881	312 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	HYP2	P23301	157 aa	Known RBP	0.81	□□□□□ -2.28
VPS54	YDR027C	MRPL11	P36521	249 aa	Predicted RBP	0.81	□□□□□ -2.28
VPS54	YDR027C	YER134C	P40081	178 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	YGL230C	P53074	147 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	PGA1	P53896	198 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	COF1	Q03048	143 aa	Known RBP	0.81	□□□□□ -2.28
VPS54	YDR027C	TMA23	Q03525	211 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	FIT1	Q04433	528 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	YLR099W-A	Q3E798	87 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	YHR213W-A	Q8TGT4	77 aa		0.81	□□□□□ -2.28
VPS54	YDR027C	YLR236C	A0A023PZG4	107 aa		0.8	□□□□□ -2.28
VPS54	YDR027C	COX5B	P00425	151 aa		0.8	□□□□□ -2.28
VPS54	YDR027C	RPS27A	P35997	82 aa	Known RBP	0.8	□□□□□ -2.28
VPS54	YDR027C	YKR045C	P36138	183 aa		0.8	□□□□□ -2.28
VPS54	YDR027C	RPS27B	P38711	82 aa		0.8	□□□□□ -2.28
VPS54	YDR027C	IPI1	P38803	334 aa	Predicted RBP	0.8	□□□□□ -2.28
VPS54	YDR027C	DSE2	P38844	325 aa		0.8	□□□□□ -2.28
VPS54	YDR027C	SBH1	P52870	82 aa		0.8	□□□□□ -2.28
VPS54	YDR027C	YDC1	Q02896	317 aa		0.8	□□□□□ -2.28
VPS54	YDR027C	FYV12	Q08559	129 aa		0.8	□□□□□ -2.28
VPS54	YDR027C	YPR202W	Q08993	238 aa		0.8	□□□□□ -2.28
VPS54	YDR027C	FCF2	Q12035	217 aa	Predicted RBP	0.8	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 45.3 ms