RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 FGFBP2Q9BYJ0 223 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 TRIM9Q9C026 710 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 MTMR12Q9C0I1 747 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 PCIF1Q9H4Z3 704 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 MAGEF1Q9HAY2 307 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 SIX4Q9UIU6 781 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 EML5Q05BV3 1969 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 UBE4BO95155 1302 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 K7ESF4 209 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 TNNC2P02585 160 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 MAGEA11P43364 429 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 RUNX3Q13761 415 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 MAPRE1Q15691 268 aaKnown RBP19.76■□□□□ 0.75
CLN3-241ENST00000635861 DUOXA2Q1HG44 320 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 RSPO4Q2I0M5 234 aaPredicted RBP19.76■□□□□ 0.75
CLN3-241ENST00000635861 C4orf50Q6ZRC1 276 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 LIMS2Q7Z4I7 341 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 SPATA2LQ8IUW3 424 aaPredicted RBP19.76■□□□□ 0.75
CLN3-241ENST00000635861 WDR49Q8IV35 697 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 IQUBQ8NA54 791 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 USP13Q92995 863 aaPredicted RBP19.76■□□□□ 0.75
CLN3-241ENST00000635861 GKN1Q9NS71 199 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 RBM12Q9NTZ6 932 aaKnown RBP19.76■□□□□ 0.75
CLN3-241ENST00000635861 FOXD2O60548 495 aaPredicted RBP19.75■□□□□ 0.75
CLN3-241ENST00000635861 CUTAO60888 179 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 RETP07949 1114 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 CYP2F1P24903 491 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 TNK2Q07912 1038 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 PDGFRLQ15198 375 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 SOWAHAQ2M3V2 549 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 WDR44Q5JSH3 913 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 CC2D1AQ6P1N0 951 aaPredicted RBP19.75■□□□□ 0.75
CLN3-241ENST00000635861 FAM171BQ6P995 826 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 FSIP1Q8NA03 581 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 NOC3LQ8WTT2 800 aaKnown RBP19.75■□□□□ 0.75
CLN3-241ENST00000635861 GTF3C4Q9UKN8 822 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 CDH9Q9ULB4 789 aa19.75■□□□□ 0.75
CLN3-241ENST00000635861 MAGED2Q9UNF1 606 aaPredicted RBP19.75■□□□□ 0.75
CLN3-241ENST00000635861 CCDC163A0A0D9SF12 145 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 TRDMT1O14717 391 aaKnown RBP19.74■□□□□ 0.75
CLN3-241ENST00000635861 ATG13O75143 517 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 FAM163BP0C2L3 166 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 PFKLP17858 780 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 TGM1P22735 817 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 ACAT1P24752 427 aaKnown RBP19.74■□□□□ 0.75
CLN3-241ENST00000635861 PDE6CP51160 858 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 FAM160A1Q05DH4 1040 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 GRSF1Q12849 480 aaKnown RBP eCLIP19.74■□□□□ 0.75
CLN3-241ENST00000635861 DDR2Q16832 855 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 TMEM196Q5HYL7 178 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 TXNDC8Q6A555 127 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 VSTM1Q6UX27 236 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 Q6ZS52 159 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 EPM2AIP1Q7L775 607 aaPredicted RBP19.74■□□□□ 0.75
CLN3-241ENST00000635861 TTC8Q8TAM2 541 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 ZNF507Q8TCN5 953 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 HPDLQ96IR7 371 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 SMG9Q9H0W8 520 aaKnown RBP19.74■□□□□ 0.75
CLN3-241ENST00000635861 HSPBP1Q9NZL4 362 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 EHD2Q9NZN4 543 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 USP18Q9UMW8 372 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 CCL26Q9Y258 94 aa19.74■□□□□ 0.75
CLN3-241ENST00000635861 TULP1O00294 542 aaPredicted RBP19.73■□□□□ 0.75
CLN3-241ENST00000635861 TCF3P15923 654 aa19.73■□□□□ 0.75
CLN3-241ENST00000635861 GPR15P49685 360 aa19.73■□□□□ 0.75
CLN3-241ENST00000635861 SIM2Q14190 667 aaPredicted RBP19.73■□□□□ 0.75
CLN3-241ENST00000635861 WDR5BQ86VZ2 330 aa19.73■□□□□ 0.75
CLN3-241ENST00000635861 OSTM1Q86WC4 334 aa19.73■□□□□ 0.75
CLN3-241ENST00000635861 SPATA17Q96L03 361 aa19.73■□□□□ 0.75
CLN3-241ENST00000635861 HPS4Q9NQG7 708 aa19.73■□□□□ 0.75
CLN3-241ENST00000635861 CGNQ9P2M7 1197 aaKnown RBP19.73■□□□□ 0.75
CLN3-241ENST00000635861 NCOR2Q9Y618 2525 aa19.73■□□□□ 0.75
CLN3-241ENST00000635861 TRAV19A0A0A6YYK7 116 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 CHURC1-FNTBB4DL54 471 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 TADA3O75528 432 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 USP17L7P0C7H9 530 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 DRD1P21728 446 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 WARSP23381 471 aaKnown RBP19.72■□□□□ 0.75
CLN3-241ENST00000635861 ANP32AP39687 249 aaKnown RBP19.72■□□□□ 0.75
CLN3-241ENST00000635861 FNTBP49356 437 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 CDR1P51861 262 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 ASIC1P78348 528 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 FBXO43Q4G163 708 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 FAM26FQ5R3K3 315 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 PRR23BQ6ZRT6 265 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 CBWD2Q8IUF1 395 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 OR5B17Q8NGF7 314 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 C7orf25Q9BPX7 421 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 SYT15Q9BQS2 421 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 RTKNQ9BST9 563 aa19.72■□□□□ 0.75
CLN3-241ENST00000635861 MAGEC2Q9UBF1 373 aaPredicted RBP19.72■□□□□ 0.75
CLN3-241ENST00000635861 CDV3Q9UKY7 258 aaKnown RBP19.72■□□□□ 0.75
CLN3-241ENST00000635861 MYH10P35580 1976 aa19.71■□□□□ 0.75
CLN3-241ENST00000635861 MTF1Q14872 753 aa19.71■□□□□ 0.75
CLN3-241ENST00000635861 SNRNP35Q16560 246 aaKnown RBP19.71■□□□□ 0.75
CLN3-241ENST00000635861 CPA6Q8N4T0 437 aa19.71■□□□□ 0.75
CLN3-241ENST00000635861 KIAA1958Q8N8K9 716 aa19.71■□□□□ 0.75
CLN3-241ENST00000635861 KBTBD7Q8WVZ9 684 aa19.71■□□□□ 0.75
CLN3-241ENST00000635861 SNX21Q969T3 373 aa19.71■□□□□ 0.75
CLN3-241ENST00000635861 DHX58Q96C10 678 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms