RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ADCY1Q08828 1119 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 CTC1Q2NKJ3 1217 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 CFAP221Q4G0U5 840 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 TMEM184AQ6ZMB5 413 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 C4orf50Q6ZRC1 276 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 FAM71AQ8IYT1 594 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 MICALL1Q8N3F8 863 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 TTC9BQ8N6N2 239 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 C12orf29Q8N999 325 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 ATAD1Q8NBU5 361 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 KREMEN2Q8NCW0 462 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 SPPL2BQ8TCT7 592 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 HDAC7Q8WUI4 952 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 BAP1Q92560 729 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 FUBP3Q96I24 572 aaKnown RBP eCLIP20.96■□□□□ 0.95
UPF3A-211ENST00000618700 B3GNT5Q9BYG0 378 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 DNAI2Q9GZS0 605 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 NLRC4Q9NPP4 1024 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 FAM49BQ9NUQ9 324 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 HSFX1Q9UBD0 423 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 PCDHB5Q9Y5E4 795 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 LINC01565O15544 149 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 SEC24AO95486 1093 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 ZNF75DP51815 510 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 ADAM15Q13444 863 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 ARHGAP17Q68EM7 881 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 LLGL2Q6P1M3 1020 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 PAQR9Q6ZVX9 377 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 VSTM4Q8IW00 320 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 TCEAL8Q8IYN2 117 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 FUKQ8N0W3 1084 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 MAFAQ8NHW3 353 aaPredicted RBP20.95■□□□□ 0.94
UPF3A-211ENST00000618700 EDEM3Q9BZQ6 932 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 PLEKHA4Q9H4M7 779 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 IGFLR1Q9H665 355 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 MAN1C1Q9NR34 630 aa20.95■□□□□ 0.94
UPF3A-211ENST00000618700 ABI2Q9NYB9 513 aaPredicted RBP20.95■□□□□ 0.94
UPF3A-211ENST00000618700 MTCL1Q9Y4B5 1905 aaKnown RBP20.94■□□□□ 0.94
UPF3A-211ENST00000618700 NCK2O43639 380 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 SPATA31D3P0C874 917 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 CCDC130P13994 396 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 CDR1P51861 262 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 DUSP4Q13115 394 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 SPECC1LQ69YQ0 1117 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 SPATA31D4Q6ZUB0 917 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 RTL10Q7L3V2 364 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 FAM35AQ86V20 835 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 SPATA2LQ8IUW3 424 aaPredicted RBP20.94■□□□□ 0.94
UPF3A-211ENST00000618700 CASP10Q92851 521 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 IQCDQ96DY2 449 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 MRFAP1L1Q96HT8 127 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 HEXIM2Q96MH2 286 aaKnown RBP20.94■□□□□ 0.94
UPF3A-211ENST00000618700 SPAG5Q96R06 1193 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 HNRNPABQ99729 332 aaKnown RBP20.94■□□□□ 0.94
UPF3A-211ENST00000618700 NUP58Q9BVL2 599 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 KIAA1257Q9ULG3 409 aa20.94■□□□□ 0.94
UPF3A-211ENST00000618700 EYSQ5T1H1 3165 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 A0A1W2PQJ5 194 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 CLDN5O00501 218 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 CYP26A1O43174 497 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 PAPLNO95428 1278 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 GYPCP04921 128 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 VDRP11473 427 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 SOX5P35711 763 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 MAGEA11P43364 429 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 CYP27A1Q02318 531 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 PPP1R26Q5T8A7 1209 aaPredicted RBP20.93■□□□□ 0.94
UPF3A-211ENST00000618700 CACNA2D4Q7Z3S7 1137 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 SLC7A14Q8TBB6 771 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 SLC2A14Q8TDB8 520 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 TFAP2BQ92481 460 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 PABPC5Q96DU9 382 aaKnown RBP20.93■□□□□ 0.94
UPF3A-211ENST00000618700 ZSWIM1Q9BR11 485 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 RHOBTB2Q9BYZ6 727 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 ZNF518BQ9C0D4 1074 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 CYP4F11Q9HBI6 524 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 DZANK1Q9NVP4 752 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 DPP7Q9UHL4 492 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 MYO6Q9UM54 1294 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 YIPF1Q9Y548 306 aa20.93■□□□□ 0.94
UPF3A-211ENST00000618700 O00370 1275 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 ZMYND10O75800 440 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 CALCAP01258 141 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 C8AP07357 584 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 HAPLN1P10915 354 aaPredicted RBP20.92■□□□□ 0.94
UPF3A-211ENST00000618700 CD19P15391 556 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 CYP2F1P24903 491 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 HOXA9P31269 272 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 ELF1P32519 619 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 CLCN1P35523 988 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 USP8P40818 1118 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 STAT1P42224 750 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 SGO2Q562F6 1265 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 LIN9Q5TKA1 542 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 VSTM1Q6UX27 236 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 CCDC149Q6ZUS6 474 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 CYFIP2Q96F07 1278 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 ACP6Q9NPH0 428 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 TMEM30AQ9NV96 361 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.92■□□□□ 0.942e-6■■■■□ 23.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms