RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 GTF3C4Q9UKN8 822 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 ASB3Q9Y575 518 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 NCOR2Q9Y618 2525 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 A0A1W2PRU2 124 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 PSMA7O14818 248 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 CETN3O15182 167 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 SP9P0CG40 484 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 EPB41P11171 864 aaKnown RBP17.09■□□□□ 0.33
BRCA1-228ENST00000618469 LMO2P25791 158 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 GPR15P49685 360 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 PUM1Q14671 1186 aaKnown RBP eCLIP17.09■□□□□ 0.33
BRCA1-228ENST00000618469 RSPO4Q2I0M5 234 aaPredicted RBP17.09■□□□□ 0.33
BRCA1-228ENST00000618469 ZNF667Q5HYK9 610 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 SV2AQ7L0J3 742 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 SPATA2LQ8IUW3 424 aaPredicted RBP17.09■□□□□ 0.33
BRCA1-228ENST00000618469 OR6B3Q8NGW1 331 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 SHKBP1Q8TBC3 707 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 GIPC2Q8TF65 315 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 MYLPFQ96A32 169 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 FOXQ1Q9C009 403 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 SLITRK6Q9H5Y7 841 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 VRTNQ9H8Y1 702 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 ZNF334Q9HCZ1 680 aaPredicted RBP17.09■□□□□ 0.33
BRCA1-228ENST00000618469 WNT16Q9UBV4 365 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 CDH9Q9ULB4 789 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 PTPRDP23468 1912 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 CEP250Q9BV73 2442 aa17.09■□□□□ 0.33
BRCA1-228ENST00000618469 MYBPHLA2RUH7 354 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 BIN1O00499 593 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 IKBKBO14920 756 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 ATP2C2O75185 946 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 TACC1O75410 805 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 MOSPD3O75425 235 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 MICAL2O94851 1124 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 HLA-DRAP01903 254 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 PDGFRBP09619 1106 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 GLULP15104 373 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 RAP1GAPP47736 663 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 GCLMP48507 274 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 PMS1P54277 932 aaKnown RBP17.08■□□□□ 0.32
BRCA1-228ENST00000618469 LRRC63Q05C16 580 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 TEAD2Q15562 447 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 TAF12Q16514 161 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 DNAJB7Q7Z6W7 309 aaPredicted RBP17.08■□□□□ 0.32
BRCA1-228ENST00000618469 STKLD1Q8NE28 680 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 MKNK1Q9BUB5 465 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 RPP25Q9BUL9 199 aaKnown RBP17.08■□□□□ 0.32
BRCA1-228ENST00000618469 LRRC3Q9BY71 257 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 ABCB6Q9NP58 842 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 CRTAC1Q9NQ79 661 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 NME7Q9Y5B8 376 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 OTOGLQ3ZCN5 2332 aa17.08■□□□□ 0.32
BRCA1-228ENST00000618469 OBSL1O75147 1896 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 NUP210Q8TEM1 1887 aaPredicted RBP17.07■□□□□ 0.32
BRCA1-228ENST00000618469 SRFP11831 508 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 CD44P16070 742 aaKnown RBP17.07■□□□□ 0.32
BRCA1-228ENST00000618469 CYP2F1P24903 491 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 GABRR2P28476 465 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 GNL1P36915 607 aaPredicted RBP17.07■□□□□ 0.32
BRCA1-228ENST00000618469 PPP3CAQ08209 521 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 CFAP221Q4G0U5 840 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 DCAF17Q5H9S7 520 aaPredicted RBP17.07■□□□□ 0.32
BRCA1-228ENST00000618469 MDH1BQ5I0G3 518 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 SDHAF4Q5VUM1 108 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 ANKRD40Q6AI12 368 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 KLHL10Q6JEL2 608 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 POTEHQ6S545 545 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 C4orf50Q6ZRC1 276 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 RUBCNQ92622 972 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 FUBP3Q96I24 572 aaKnown RBP eCLIP17.07■□□□□ 0.32
BRCA1-228ENST00000618469 GCNAQ96QF7 691 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 IMPG2Q9BZV3 1241 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 SEMA4AQ9H3S1 761 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 DPEP3Q9H4B8 488 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.07■□□□□ 0.32
BRCA1-228ENST00000618469 CTNND2Q9UQB3 1225 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 SIT1Q9Y3P8 196 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 SPTBN2O15020 2390 aa17.07■□□□□ 0.32
BRCA1-228ENST00000618469 MIA3Q5JRA6 1907 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 A8MXQ7 604 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 SLC16A3O15427 465 aaKnown RBP17.06■□□□□ 0.32
BRCA1-228ENST00000618469 ASS1P00966 412 aaKnown RBP17.06■□□□□ 0.32
BRCA1-228ENST00000618469 P4HA1P13674 534 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 CCNE1P24864 410 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 PPP1R2P41236 205 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 MXI1P50539 228 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 NOP14P78316 857 aaKnown RBP17.06■□□□□ 0.32
BRCA1-228ENST00000618469 FKBP3Q00688 224 aaKnown RBP17.06■□□□□ 0.32
BRCA1-228ENST00000618469 CYP27A1Q02318 531 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 ENPEPQ07075 957 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 MORC3Q14149 939 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 MAPRE1Q15691 268 aaKnown RBP17.06■□□□□ 0.32
BRCA1-228ENST00000618469 CAMK4Q16566 473 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 FAM78AQ5JUQ0 283 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 STXBP5Q5T5C0 1151 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 SPOPLQ6IQ16 392 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 FAM171BQ6P995 826 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 C1orf210Q8IVY1 113 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 ZC3H3Q8IXZ2 948 aaKnown RBP17.06■□□□□ 0.32
BRCA1-228ENST00000618469 TAS1R2Q8TE23 839 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms