RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PUS10Q3MIT2 529 aaKnown RBP20.58■□□□□ 0.89
UPF1-209ENST00000600310 FILIP1LQ4L180 1135 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 ZNF394Q53GI3 561 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 SMYD5Q6GMV2 418 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 FEZF2Q8TBJ5 459 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 ATXN2LQ8WWM7 1075 aaKnown RBP20.58■□□□□ 0.89
UPF1-209ENST00000600310 ERGIC2Q96RQ1 377 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 LSM14BQ9BX40 385 aaKnown RBP20.58■□□□□ 0.89
UPF1-209ENST00000600310 B3GNT5Q9BYG0 378 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 PLCB1Q9NQ66 1216 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 CNTN6Q9UQ52 1028 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 SIK3Q9Y2K2 1263 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 PCDHB4Q9Y5E5 795 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 A0A1B0GTH6 734 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 GRXCR2A6NFK2 248 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 CCL16O15467 120 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 MBTPS2O43462 519 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 XYLBO75191 536 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 SERPINC1P01008 464 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 CYP2F1P24903 491 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 MAGEA11P43364 429 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 ALDH1A3P47895 512 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 FANCCQ00597 558 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 TWF1Q12792 350 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 PLD1Q13393 1074 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 SYCP1Q15431 976 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 ATAT1Q5SQI0 421 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 KLHDC7AQ5VTJ3 777 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 VSTM1Q6UX27 236 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 C12orf29Q8N999 325 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 SLC4A11Q8NBS3 891 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 RNF214Q8ND24 703 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 SUSD6Q92537 303 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 SMG7Q92540 1137 aaKnown RBP20.57■□□□□ 0.88
UPF1-209ENST00000600310 NAP1L5Q96NT1 182 aaPredicted RBP20.57■□□□□ 0.88
UPF1-209ENST00000600310 SEPT5Q99719 369 aaPredicted RBP20.57■□□□□ 0.88
UPF1-209ENST00000600310 DNAJC12Q9UKB3 198 aa20.57■□□□□ 0.88
UPF1-209ENST00000600310 USP15Q9Y4E8 981 aaPredicted RBP20.57■□□□□ 0.88
UPF1-209ENST00000600310 MTCL1Q9Y4B5 1905 aaKnown RBP20.57■□□□□ 0.88
UPF1-209ENST00000600310 SOAT2O75908 522 aa20.56■□□□□ 0.88
UPF1-209ENST00000600310 BDNFP23560 247 aa20.56■□□□□ 0.88
UPF1-209ENST00000600310 TMEM270Q6UE05 265 aa20.56■□□□□ 0.88
UPF1-209ENST00000600310 PAQR9Q6ZVX9 377 aa20.56■□□□□ 0.88
UPF1-209ENST00000600310 FUKQ8N0W3 1084 aa20.56■□□□□ 0.88
UPF1-209ENST00000600310 HEXIM2Q96MH2 286 aaKnown RBP20.56■□□□□ 0.88
UPF1-209ENST00000600310 RIPOR3Q96MK2 946 aa20.56■□□□□ 0.88
UPF1-209ENST00000600310 ANP32EQ9BTT0 268 aa20.56■□□□□ 0.88
UPF1-209ENST00000600310 ZNF518BQ9C0D4 1074 aa20.56■□□□□ 0.88
UPF1-209ENST00000600310 PIDD1Q9HB75 910 aa20.56■□□□□ 0.88
UPF1-209ENST00000600310 SPTBN5Q9NRC6 3674 aaKnown RBP20.56■□□□□ 0.88
UPF1-209ENST00000600310 BRWD1Q9NSI6 2320 aa20.56■□□□□ 0.88
UPF1-209ENST00000600310 RNF225M0QZC1 329 aaPredicted RBP20.55■□□□□ 0.88
UPF1-209ENST00000600310 CLDN5O00501 218 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 TEX33O43247 280 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 PAEPP09466 180 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 CCDC130P13994 396 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 UCHL3P15374 230 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 ATF6P18850 670 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 RFX1P22670 979 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 MTHFRP42898 656 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 KLK7P49862 253 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 ZNF132P52740 706 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 EPHB3P54753 998 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 RPL10AP62906 217 aaKnown RBP20.55■□□□□ 0.88
UPF1-209ENST00000600310 MRPS5P82675 430 aaKnown RBP20.55■□□□□ 0.88
UPF1-209ENST00000600310 NR1I3Q14994 352 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 IQCEQ6IPM2 695 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 FAM35AQ86V20 835 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 SHC3Q92529 594 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 CYFIP2Q96F07 1278 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 HNRNPABQ99729 332 aaKnown RBP20.55■□□□□ 0.88
UPF1-209ENST00000600310 GANQ9H2C0 597 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 FAM49BQ9NUQ9 324 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 CEP72Q9P209 647 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 CDH22Q9UJ99 828 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 AJAP1Q9UKB5 411 aaPredicted RBP20.55■□□□□ 0.88
UPF1-209ENST00000600310 KIAA1257Q9ULG3 409 aa20.55■□□□□ 0.88
UPF1-209ENST00000600310 ATP8B3O60423 1300 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 NOL4O94818 638 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 ARHGAP44Q17R89 818 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 ARHGAP17Q68EM7 881 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 PTCRAQ6ISU1 281 aaPredicted RBP20.54■□□□□ 0.88
UPF1-209ENST00000600310 ELMOD1Q8N336 334 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 RBBP8NLQ8NC74 664 aaPredicted RBP20.54■□□□□ 0.88
UPF1-209ENST00000600310 SLC2A14Q8TDB8 520 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 ZNF512Q96ME7 567 aaPredicted RBP20.54■□□□□ 0.88
UPF1-209ENST00000600310 NECTIN4Q96NY8 510 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 MED10Q9BTT4 135 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 NAA15Q9BXJ9 866 aaKnown RBP20.54■□□□□ 0.88
UPF1-209ENST00000600310 FAM50BQ9Y247 325 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 DAAM1Q9Y4D1 1078 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 ASB3Q9Y575 518 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 FHOD1Q9Y613 1164 aa20.54■□□□□ 0.88
UPF1-209ENST00000600310 VDRP11473 427 aa20.53■□□□□ 0.88
UPF1-209ENST00000600310 KRT5P13647 590 aa20.53■□□□□ 0.88
UPF1-209ENST00000600310 GRIK1P39086 918 aa20.53■□□□□ 0.88
UPF1-209ENST00000600310 GPR15P49685 360 aa20.53■□□□□ 0.88
UPF1-209ENST00000600310 UBASH3AP57075 661 aa20.53■□□□□ 0.88
UPF1-209ENST00000600310 CBX2Q14781 532 aaPredicted RBP20.53■□□□□ 0.88
UPF1-209ENST00000600310 VEPH1Q14D04 833 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms