RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 APEX2Q9UBZ4 518 aa10.11□□□□□ -0.79
TRIM28-208ENST00000597172 FBXL5Q9UKA1 691 aa10.11□□□□□ -0.79
TRIM28-208ENST00000597172 CAPN11Q9UMQ6 739 aa10.11□□□□□ -0.79
TRIM28-208ENST00000597172 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.11□□□□□ -0.793e-9■□□□□ 10.3
TRIM28-208ENST00000597172 HCFC2Q9Y5Z7 792 aa10.11□□□□□ -0.79
TRIM28-208ENST00000597172 FHOD1Q9Y613 1164 aa10.11□□□□□ -0.79
TRIM28-208ENST00000597172 AKAP13Q12802 2813 aa10.11□□□□□ -0.79
TRIM28-208ENST00000597172 ACACAQ13085 2346 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 A0A1W2PQJ5 194 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 CASTOR2A6NHX0 329 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 TBKBP1A7MCY6 615 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 HOXA2O43364 376 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 GDF9O60383 454 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 LILRB5O75023 590 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 LRP3O75074 770 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 STAU1O95793 577 aaKnown RBP10.1□□□□□ -0.79
TRIM28-208ENST00000597172 RPL9P32969 192 aaKnown RBP10.1□□□□□ -0.79
TRIM28-208ENST00000597172 ADKP55263 362 aaKnown RBP10.1□□□□□ -0.79
TRIM28-208ENST00000597172 NOP14P78316 857 aaKnown RBP10.1□□□□□ -0.79
TRIM28-208ENST00000597172 TUSC3Q13454 348 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 ARID5BQ14865 1188 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 WDR44Q5JSH3 913 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 CCDC186Q7Z3E2 898 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 COLGALT2Q8IYK4 626 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 TC2NQ8N9U0 490 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 C3orf58Q8NDZ4 430 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 URGCPQ8TCY9 931 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 ANP32BQ92688 251 aaKnown RBP10.1□□□□□ -0.79
TRIM28-208ENST00000597172 TAF4BQ92750 862 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 HPDLQ96IR7 371 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 NT5C1BQ96P26 610 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 EDEM3Q9BZQ6 932 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 GPR88Q9GZN0 384 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 NRDE2Q9H7Z3 1164 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 NLRC4Q9NPP4 1024 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 IMPACTQ9P2X3 320 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 HCSTQ9UBK5 93 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 DNAJB4Q9UDY4 337 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 PUF60Q9UHX1 559 aaKnown RBP10.1□□□□□ -0.79
TRIM28-208ENST00000597172 DNAJC12Q9UKB3 198 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 RAB23Q9ULC3 237 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 POLIQ9UNA4 740 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 PTPN13Q12923 2485 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 TRIP11Q15643 1979 aa10.1□□□□□ -0.79
TRIM28-208ENST00000597172 CITO14578 2027 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 F8W810 466 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 PODXLO00592 558 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 TRIM21P19474 475 aaKnown RBP10.09□□□□□ -0.79
TRIM28-208ENST00000597172 ACO1P21399 889 aaKnown RBP10.09□□□□□ -0.79
TRIM28-208ENST00000597172 JAM2P57087 298 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 LILRA4P59901 499 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 GCNT1Q02742 428 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 CCDC173Q0VFZ6 552 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 ZNF699Q32M78 642 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 WDR72Q3MJ13 1102 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 LIMS2Q7Z4I7 341 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 PPFIBP1Q86W92 1011 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 ABI1Q8IZP0 508 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 PPM1KQ8N3J5 372 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 LRRC52Q8N7C0 313 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 UBR7Q8N806 425 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 PJA1Q8NG27 643 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 DDX27Q96GQ7 796 aaKnown RBP10.09□□□□□ -0.79
TRIM28-208ENST00000597172 ARID3AQ99856 593 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 STK33Q9BYT3 514 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 FOXQ1Q9C009 403 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 SDCBP2Q9H190 292 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 CWH43Q9H720 699 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 CEP72Q9P209 647 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 NXF1Q9UBU9 619 aaKnown RBP10.09□□□□□ -0.79
TRIM28-208ENST00000597172 LZTS1Q9Y250 596 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 LAMA5O15230 3695 aa10.09□□□□□ -0.79
TRIM28-208ENST00000597172 KPNA7A9QM74 516 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 AKR1B15C9JRZ8 316 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-208ENST00000597172 FOXN3O00409 490 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-208ENST00000597172 MFAP3LO75121 409 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 GALTP07902 379 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 RETP07949 1114 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 KRT9P35527 623 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 ASPAP45381 313 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 TAF6P49848 677 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 CDH8P55286 799 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 ZBED6P86452 979 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 RNASELQ05823 741 aaKnown RBP10.08□□□□□ -0.8
TRIM28-208ENST00000597172 MYO1EQ12965 1108 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 CUL2Q13617 745 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 TRIM14Q14142 442 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 DRAP1Q14919 205 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-208ENST00000597172 LPAL2Q16609 132 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 ARHGAP44Q17R89 818 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 ZNF667Q5HYK9 610 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 E4F1Q66K89 784 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-208ENST00000597172 LAIR1Q6GTX8 287 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 PDXDC1Q6P996 788 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 DCLRE1AQ6PJP8 1040 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 PRR23CQ6ZRP0 262 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 CCDC149Q6ZUS6 474 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 CCDC150Q8NCX0 1101 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 RSAD2Q8WXG1 361 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 RSPH1Q8WYR4 309 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms