RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 EGR3Q06889 387 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 TRPC3Q13507 836 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 DLGAP5Q15398 846 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 RAB30Q15771 203 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 SLC14A2Q15849 920 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 MEA1Q16626 185 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 NKPD1Q17RQ9 610 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 ADCK5Q3MIX3 580 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 TBC1D10BQ4KMP7 808 aaPredicted RBP6.5□□□□□ -1.37
VPS53-219ENST00000576019 FAM26FQ5R3K3 315 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 TBC1D9BQ66K14 1250 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 PPP1R3BQ86XI6 285 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 CNBD1Q8NA66 436 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 BRIX1Q8TDN6 353 aaKnown RBP6.5□□□□□ -1.37
VPS53-219ENST00000576019 SUCLG2Q96I99 432 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 MYRFLQ96LU7 910 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 KCNC2Q96PR1 638 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 NOL10Q9BSC4 688 aaKnown RBP6.5□□□□□ -1.37
VPS53-219ENST00000576019 LMAN2LQ9H0V9 348 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 SERHLQ9NQF3 203 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 PIH1D1Q9NWS0 290 aaKnown RBP6.5□□□□□ -1.37
VPS53-219ENST00000576019 TAF1P21675 1872 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 PLXNA3P51805 1871 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 ASNA1O43681 348 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 ZBED4O75132 1171 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 ARHGEF15O94989 841 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 INMTO95050 263 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 TFRCP02786 760 aaKnown RBP6.49□□□□□ -1.37
VPS53-219ENST00000576019 ANXA2P07355 339 aaKnown RBP6.49□□□□□ -1.37
VPS53-219ENST00000576019 ADMP35318 185 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 DRG2P55039 364 aaKnown RBP6.49□□□□□ -1.37
VPS53-219ENST00000576019 NAP1L1P55209 391 aaKnown RBP6.49□□□□□ -1.37
VPS53-219ENST00000576019 UBXN2AP68543 259 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 MAPK7Q13164 816 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 PLCL1Q15111 1095 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 GRIK4Q16099 956 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 ARHGAP15Q53QZ3 475 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 TANGO2Q6ICL3 276 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 DGLUCYQ7Z3D6 616 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 RSPH3Q86UC2 560 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 FAM129CQ86XR2 697 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 FAM20CQ8IXL6 584 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 SPPL3Q8TCT6 385 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 MAML1Q92585 1016 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 TMX3Q96JJ7 454 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 MRGPRX4Q96LA9 322 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 TBC1D32Q96NH3 1257 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 FDXACB1Q9BRP7 624 aaPredicted RBP6.49□□□□□ -1.37
VPS53-219ENST00000576019 ARHGAP39Q9C0H5 1083 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 JMJD4Q9H9V9 463 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 MLXIPQ9HAP2 919 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 CD320Q9NPF0 282 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 MRGBPQ9NV56 204 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS53-219ENST00000576019 ZC3H7BQ9UGR2 993 aaKnown RBP6.49□□□□□ -1.37
VPS53-219ENST00000576019 ARHGAP26Q9UNA1 814 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 SIT1Q9Y3P8 196 aa6.49□□□□□ -1.37
VPS53-219ENST00000576019 A0A087X0M5 115 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 A0A1B0GX30 115 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 PGPEP1LA6NFU8 196 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 HMX3A6NHT5 357 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 PPIP5K2O43314 1243 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 THAP12O43422 761 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 ARIH2O95376 493 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 AHSGP02765 367 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 MT-ND5P03915 603 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 MALP21145 153 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 HOXC9P31274 260 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 FLT3LGP49771 235 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 PAPOLAP51003 745 aaKnown RBP6.48□□□□□ -1.37
VPS53-219ENST00000576019 CLNS1AP54105 237 aaKnown RBP6.48□□□□□ -1.37
VPS53-219ENST00000576019 TLE2Q04725 743 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 MGAT5Q09328 741 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 TCF15Q12870 199 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 ADAM9Q13443 819 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 SNAPC2Q13487 334 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 MBTPS1Q14703 1052 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 TNIP1Q15025 636 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 SHHQ15465 462 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 TAF11Q15544 211 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 MFSD4BQ5TF39 518 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 HAUS3Q68CZ6 603 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 OTUD7BQ6GQQ9 843 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 OGFOD3Q6PK18 319 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 GADL1Q6ZQY3 521 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 SLCO6A1Q86UG4 719 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 SPACA3Q8IXA5 215 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 ARMC10Q8N2F6 343 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 SVOPQ8N4V2 548 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 FAM181AQ8N9Y4 354 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.48□□□□□ -1.37
VPS53-219ENST00000576019 PHOSPHO1Q8TCT1 267 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 GATA6Q92908 595 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 LSM14BQ9BX40 385 aaKnown RBP6.48□□□□□ -1.37
VPS53-219ENST00000576019 VPS33BQ9H267 617 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 TM7SF3Q9NS93 570 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 ORC3Q9UBD5 711 aaPredicted RBP6.48□□□□□ -1.37
VPS53-219ENST00000576019 FTSJ1Q9UET6 329 aa6.48□□□□□ -1.37
VPS53-219ENST00000576019 ASTN2O75129 1339 aaPredicted RBP6.48□□□□□ -1.37
VPS53-219ENST00000576019 COL4A6Q14031 1691 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms