RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 VEPH1Q14D04 833 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 ZNF77Q15935 545 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 DCAF4L1Q3SXM0 396 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 BROXQ5VW32 411 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 EEF1DP3Q658K8 133 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 ATG14Q6ZNE5 492 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 EFCAB13Q8IY85 973 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 LNPKQ9C0E8 428 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 VAV3Q9UKW4 847 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 A0A0A0MRY4 1105 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 TDP2O95551 362 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 F11P03951 625 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 FAM160A1Q05DH4 1040 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 RTN1Q16799 776 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 EMC10Q5UCC4 262 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 TXNDC8Q6A555 127 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 APOA5Q6Q788 366 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 MON1AQ86VX9 555 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 SFTPA1Q8IWL2 248 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 ZNF248Q8NDW4 579 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 ENGASEQ8NFI3 743 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 BICD2Q8TD16 824 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 ZMAT2Q96NC0 199 aaKnown RBP17.68■□□□□ 0.42
VPS53-218ENST00000575207 HSPBP1Q9NZL4 362 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 GMIPQ9P107 970 aa17.68■□□□□ 0.42
VPS53-218ENST00000575207 LRRIQ4A6NIV6 560 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 M0QZQ0 153 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 LARGE1O95461 756 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 CDK4P11802 303 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 ATF6P18850 670 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 GRK6P43250 576 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 NLRP12P59046 1061 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 NFATC3Q12968 1075 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 USP4Q13107 963 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 MYBPC2Q14324 1141 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 SYNE3Q6ZMZ3 975 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 ZSWIM4Q9H7M6 989 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 RCAN3Q9UKA8 241 aa17.67■□□□□ 0.42
VPS53-218ENST00000575207 ACKR2O00590 384 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 NFATC1O95644 943 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 NMT1P30419 496 aaKnown RBP17.66■□□□□ 0.42
VPS53-218ENST00000575207 TUFMP49411 452 aaKnown RBP17.66■□□□□ 0.42
VPS53-218ENST00000575207 CLDN6P56747 220 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 VAC14Q08AM6 782 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 EPHA7Q15375 998 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 TMEM132AQ24JP5 1023 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 ZBTB8OSQ8IWT0 167 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 TBCKQ8TEA7 893 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 PSMG3-AS1Q96PY0 264 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 POLR3FQ9H1D9 316 aaPredicted RBP17.66■□□□□ 0.42
VPS53-218ENST00000575207 LINC00597Q9H2U6 94 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 TOPORSQ9NS56 1045 aaPredicted RBP17.66■□□□□ 0.42
VPS53-218ENST00000575207 RGL1Q9NZL6 768 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 CYP8B1Q9UNU6 501 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 USP20Q9Y2K6 914 aa17.66■□□□□ 0.42
VPS53-218ENST00000575207 CLEC18AA5D8T8 446 aa17.65■□□□□ 0.42
VPS53-218ENST00000575207 EDN1P05305 212 aa17.65■□□□□ 0.42
VPS53-218ENST00000575207 KCNE1P15382 129 aa17.65■□□□□ 0.42
VPS53-218ENST00000575207 MESP2Q0VG99 397 aa17.65■□□□□ 0.42
VPS53-218ENST00000575207 CLEC18BQ6UXF7 455 aa17.65■□□□□ 0.42
VPS53-218ENST00000575207 CLEC18CQ8NCF0 446 aa17.65■□□□□ 0.42
VPS53-218ENST00000575207 ACAP3Q96P50 834 aa17.65■□□□□ 0.42
VPS53-218ENST00000575207 TIMM13Q9Y5L4 95 aaPredicted RBP17.65■□□□□ 0.42
VPS53-218ENST00000575207 NDUFS2O75306 463 aa17.64■□□□□ 0.41
VPS53-218ENST00000575207 KAT7O95251 611 aa17.64■□□□□ 0.41
VPS53-218ENST00000575207 EIF2DP41214 584 aaKnown RBP17.64■□□□□ 0.41
VPS53-218ENST00000575207 TAF12Q16514 161 aa17.64■□□□□ 0.41
VPS53-218ENST00000575207 MOXD1Q6UVY6 613 aa17.64■□□□□ 0.41
VPS53-218ENST00000575207 USP49Q70CQ1 688 aa17.64■□□□□ 0.41
VPS53-218ENST00000575207 POTEDQ86YR6 584 aa17.64■□□□□ 0.41
VPS53-218ENST00000575207 ZCCHC9Q8N567 271 aaKnown RBP17.64■□□□□ 0.41
VPS53-218ENST00000575207 TSC1Q92574 1164 aa17.64■□□□□ 0.41
VPS53-218ENST00000575207 YTHDC1Q96MU7 727 aaKnown RBP17.64■□□□□ 0.41
VPS53-218ENST00000575207 PNKPQ96T60 521 aa17.64■□□□□ 0.41
VPS53-218ENST00000575207 LRRC2Q9BYS8 371 aa17.64■□□□□ 0.41
VPS53-218ENST00000575207 ZDHHC4Q9NPG8 344 aa17.64■□□□□ 0.41
VPS53-218ENST00000575207 SUV39H1O43463 412 aa17.63■□□□□ 0.41
VPS53-218ENST00000575207 C1SP09871 688 aa17.63■□□□□ 0.41
VPS53-218ENST00000575207 HMGA1P17096 107 aaKnown RBP17.63■□□□□ 0.41
VPS53-218ENST00000575207 TNFRSF4P43489 277 aa17.63■□□□□ 0.41
VPS53-218ENST00000575207 YARSP54577 528 aaKnown RBP17.63■□□□□ 0.41
VPS53-218ENST00000575207 C6orf132Q5T0Z8 1188 aa17.63■□□□□ 0.41
VPS53-218ENST00000575207 MRPS31Q92665 395 aaKnown RBP17.63■□□□□ 0.41
VPS53-218ENST00000575207 C18orf25Q96B23 403 aaPredicted RBP17.63■□□□□ 0.41
VPS53-218ENST00000575207 HIC2Q96JB3 615 aa17.63■□□□□ 0.41
VPS53-218ENST00000575207 SEPT5Q99719 369 aaPredicted RBP17.63■□□□□ 0.41
VPS53-218ENST00000575207 CCDC113Q9H0I3 377 aa17.63■□□□□ 0.41
VPS53-218ENST00000575207 C2orf40Q9H1Z8 148 aa17.63■□□□□ 0.41
VPS53-218ENST00000575207 SLKQ9H2G2 1235 aaPredicted RBP17.63■□□□□ 0.41
VPS53-218ENST00000575207 TMEM206Q9H813 350 aa17.63■□□□□ 0.41
VPS53-218ENST00000575207 SEPT3Q9UH03 358 aa17.63■□□□□ 0.41
VPS53-218ENST00000575207 POLQO75417 2590 aa17.63■□□□□ 0.41
VPS53-218ENST00000575207 MYMKA6NI61 221 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 TRIM66O15016 1216 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 PCDHGA12O60330 932 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 APODP05090 189 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 MYF5P13349 255 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 TCF3P15923 654 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 GRM5P41594 1212 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 PCBP4P57723 403 aaKnown RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms