RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 RNF146Q9NTX7 359 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 YDJCA8MPS7 323 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 RAD17O75943 681 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 CCNHP51946 323 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-207ENST00000572253 CNTNAP1P78357 1384 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 GRIK3Q13003 919 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 GNPTABQ3T906 1256 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 CIAPIN1Q6FI81 312 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 C4orf50Q6ZRC1 276 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 POLNQ7Z5Q5 900 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 APBB1IPQ7Z5R6 666 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-207ENST00000572253 VSIG10LQ86VR7 867 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 ACTL9Q8TC94 416 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 ZWILCHQ9H900 591 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 STYXL1Q9Y6J8 313 aa11.29□□□□□ -0.6
CCDC40-207ENST00000572253 LTBP4Q8N2S1 1624 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 CLUHO75153 1309 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 A6NHS1 94 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 CST8O60676 142 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 BANF1O75531 89 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 ABL2P42684 1182 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 CCDC142Q17RM4 750 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 C6orf163Q5TEZ5 329 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 CDCA2Q69YH5 1023 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 SCYL3Q8IZE3 742 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 KLF6Q99612 283 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 CCDC189A1A4V9 331 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 I3L4J1 428 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 MCF2LO15068 1137 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 BRD2P25440 801 aaKnown RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 YWHAEP62258 255 aaKnown RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 BASP1P80723 227 aaKnown RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 TRPC3Q13507 836 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 GPAT2Q6NUI2 795 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 RFX6Q8HWS3 928 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 TRIM42Q8IWZ5 723 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 TAB3Q8N5C8 712 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 NSUN6Q8TEA1 469 aaKnown RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 SYNCQ9H7C4 482 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 FARP1Q9Y4F1 1045 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 EIF4E1BA6NMX2 242 aaKnown RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 NAMPTP43490 491 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 CDK16Q00536 496 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 EFTUD2Q15029 972 aaKnown RBP eCLIP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 WDR72Q3MJ13 1102 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 THNSL1Q8IYQ7 743 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 NIPA2Q8N8Q9 360 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 BANPQ8N9N5 519 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 RFWD2Q8NHY2 731 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 CPT1BQ92523 772 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 TTC17Q96AE7 1141 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 TMEM143Q96AN5 459 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 TCHPQ9BT92 498 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 TARS2Q9BW92 718 aaKnown RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 ALG13Q9NP73 1137 aaKnown RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 PDLIM7Q9NR12 457 aa11.28□□□□□ -0.6
CCDC40-207ENST00000572253 XPO7Q9UIA9 1087 aaKnown RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 ZMYND8Q9ULU4 1186 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-207ENST00000572253 SPAG6O75602 509 aa11.27□□□□□ -0.6
CCDC40-207ENST00000572253 GM2AP17900 193 aa11.27□□□□□ -0.6
CCDC40-207ENST00000572253 ACTR2P61160 394 aa11.27□□□□□ -0.6
CCDC40-207ENST00000572253 YWHAGP61981 247 aaKnown RBP eCLIP11.27□□□□□ -0.6
CCDC40-207ENST00000572253 PTK7Q13308 1070 aa11.27□□□□□ -0.6
CCDC40-207ENST00000572253 RCN1Q15293 331 aa11.27□□□□□ -0.6
CCDC40-207ENST00000572253 ANO7Q6IWH7 933 aa11.27□□□□□ -0.6
CCDC40-207ENST00000572253 BBS12Q6ZW61 710 aa11.27□□□□□ -0.6
CCDC40-207ENST00000572253 PDCD7Q8N8D1 485 aaKnown RBP11.27□□□□□ -0.6
CCDC40-207ENST00000572253 SLC7A3Q8WY07 619 aa11.27□□□□□ -0.6
CCDC40-207ENST00000572253 TMEM120AQ9BXJ8 343 aa11.27□□□□□ -0.6
CCDC40-207ENST00000572253 PTPRJQ12913 1337 aa11.27□□□□□ -0.6
CCDC40-207ENST00000572253 TGDSO95455 350 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 PIGRP01833 764 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 ATP4AP20648 1035 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 CHRNA5P30532 468 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 RPL22P35268 128 aaKnown RBP11.27□□□□□ -0.61
CCDC40-207ENST00000572253 LGSNQ5TDP6 509 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 IRGCQ6NXR0 463 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 OR5B17Q8NGF7 314 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 APOPT1Q96IL0 206 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 ZBTB45Q96K62 511 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-207ENST00000572253 TSC22D3Q99576 134 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 CADM1Q9BY67 442 aaKnown RBP11.27□□□□□ -0.61
CCDC40-207ENST00000572253 NIF3L1Q9GZT8 377 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 ARL8BQ9NVJ2 186 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 SCOCQ9UIL1 159 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 CD19P15391 556 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 ZNF132P52740 706 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 ZNF200P98182 395 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-207ENST00000572253 ZNF252P-AS1Q0IIN9 211 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 LBRQ14739 615 aaKnown RBP11.27□□□□□ -0.61
CCDC40-207ENST00000572253 ZNF394Q53GI3 561 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 FNBP1LQ5T0N5 605 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 ANKRD22Q5VYY1 191 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 CHSY1Q86X52 802 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 CCDC60Q8IWA6 550 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-207ENST00000572253 CDAN1Q8IWY9 1227 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 NAT8LQ8N9F0 302 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 SLC17A7Q9P2U7 560 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 ZNRF3Q9ULT6 936 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 CHMP2BQ9UQN3 213 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms