RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 DHX58Q96C10 678 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 FAM83CQ9BQN1 747 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 MAGEF1Q9HAY2 307 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 DLL3Q9NYJ7 618 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 HSPBP1Q9NZL4 362 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 CNR2P34972 360 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 GPR15P49685 360 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 AMPD2Q01433 879 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 MAPRE1Q15691 268 aaKnown RBP20.07■□□□□ 0.8
CLN3-218ENST00000565688 FAM26FQ5R3K3 315 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 TXNDC8Q6A555 127 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 LAIR1Q6GTX8 287 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 CC2D1AQ6P1N0 951 aaPredicted RBP20.07■□□□□ 0.8
CLN3-218ENST00000565688 C4orf50Q6ZRC1 276 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 EPM2AIP1Q7L775 607 aaPredicted RBP20.07■□□□□ 0.8
CLN3-218ENST00000565688 LIMS2Q7Z4I7 341 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 OSTM1Q86WC4 334 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 CBWD2Q8IUF1 395 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 GLIS3Q8NEA6 775 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 OR5B17Q8NGF7 314 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 ZNF507Q8TCN5 953 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 HPS3Q969F9 1004 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 FAM84AQ96KN4 292 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 CCL26Q9Y258 94 aa20.07■□□□□ 0.8
CLN3-218ENST00000565688 UBE4BO95155 1302 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 PTPRJQ12913 1337 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 HOXA6P31267 233 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 HOXD13P35453 343 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 MAGEA11P43364 429 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 SNRPFP62306 86 aaKnown RBP20.06■□□□□ 0.8
CLN3-218ENST00000565688 LMNB2Q03252 620 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 RUNX3Q13761 415 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 WDR44Q5JSH3 913 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 SDHAF4Q5VUM1 108 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 LMBRD2Q68DH5 695 aaPredicted RBP20.06■□□□□ 0.8
CLN3-218ENST00000565688 SCARA3Q6AZY7 606 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 FAM171BQ6P995 826 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 Q6ZS52 159 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 LONP2Q86WA8 852 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 FSIP1Q8NA03 581 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 SNX21Q969T3 373 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 CEP295NLQ96MC4 621 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 C7orf25Q9BPX7 421 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 CDH9Q9ULB4 789 aa20.06■□□□□ 0.8
CLN3-218ENST00000565688 KIF26AQ9ULI4 1882 aaPredicted RBP20.05■□□□□ 0.8
CLN3-218ENST00000565688 PRR5-ARHGAP8B1AHC4 643 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 K7ESF4 209 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 ARHGAP8P85298 464 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 GRSF1Q12849 480 aaKnown RBP eCLIP20.05■□□□□ 0.8
CLN3-218ENST00000565688 PDGFRLQ15198 375 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 SNRNP35Q16560 246 aaKnown RBP20.05■□□□□ 0.8
CLN3-218ENST00000565688 RSPO4Q2I0M5 234 aaPredicted RBP20.05■□□□□ 0.8
CLN3-218ENST00000565688 SHC4Q6S5L8 630 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 VSTM1Q6UX27 236 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 STKLD1Q8NE28 680 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 EXOC4Q96A65 974 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 SYT15Q9BQS2 421 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 EBF3Q9H4W6 596 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 HPS4Q9NQG7 708 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 AGPAT3Q9NRZ7 376 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 DENND4CQ5VZ89 1909 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 DNAH14Q0VDD8 3507 aa20.05■□□□□ 0.8
CLN3-218ENST00000565688 TRAV19A0A0A6YYK7 116 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 CHURC1-FNTBB4DL54 471 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 LRP3O75074 770 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 USP17L7P0C7H9 530 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 FNTBP49356 437 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 FAM160A1Q05DH4 1040 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 SIM2Q14190 667 aaPredicted RBP20.04■□□□□ 0.8
CLN3-218ENST00000565688 PRR23BQ6ZRT6 265 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 UNC13DQ70J99 1090 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 HS2ST1Q7LGA3 356 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 TRAPPC11Q7Z392 1133 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 SCN4BQ8IWT1 228 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 KBTBD7Q8WVZ9 684 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 FNBP1Q96RU3 617 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 CGNQ9P2M7 1197 aaKnown RBP20.04■□□□□ 0.8
CLN3-218ENST00000565688 MAGEC2Q9UBF1 373 aaPredicted RBP20.04■□□□□ 0.8
CLN3-218ENST00000565688 USP18Q9UMW8 372 aa20.04■□□□□ 0.8
CLN3-218ENST00000565688 TRDMT1O14717 391 aaKnown RBP20.03■□□□□ 0.8
CLN3-218ENST00000565688 POLR2DO15514 142 aaKnown RBP20.03■□□□□ 0.8
CLN3-218ENST00000565688 TGFB1I1O43294 461 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 HCRTO43612 131 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 ATG13O75143 517 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 TADA3O75528 432 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 CKMP06732 381 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 RETP07949 1114 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 WARSP23381 471 aaKnown RBP20.03■□□□□ 0.8
CLN3-218ENST00000565688 PDE6CP51160 858 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 TMEM196Q5HYL7 178 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 TRIM68Q6AZZ1 485 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 ATL3Q6DD88 541 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 SPATA17Q96L03 361 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 MMS19Q96T76 1030 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 TRPC7Q9HCX4 862 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 EHD2Q9NZN4 543 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 OBSL1O75147 1896 aa20.03■□□□□ 0.8
CLN3-218ENST00000565688 HRO43593 1189 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 ATP2C2O75185 946 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 HSP90AA1P07900 732 aaKnown RBP20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms