RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 ALS2CLQ60I27 953 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 PPP1R2P3Q6NXS1 205 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 TMC3Q7Z5M5 1100 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 KATNAL2Q8IYT4 538 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 LRRC19Q9H756 370 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 CNTN3Q9P232 1028 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 SCN10AQ9Y5Y9 1956 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 ECEL1O95672 775 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 PFKMP08237 780 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 IL1R2P27930 398 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 TAF5Q15542 800 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 ODF2Q5BJF6 829 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 CEP85LQ5SZL2 805 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 MFSD14CQ5VZR4 134 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 APBB1IPQ7Z5R6 666 aaPredicted RBP15.32■□□□□ 0.04
CLIP1-216ENST00000541410 NT5DC4Q86YG4 428 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 MREGQ8N565 214 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 LPPQ93052 612 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 DCLK3Q9C098 648 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLIP1-216ENST00000541410 STRIP2Q9ULQ0 834 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 GOLGA6CA6NDK9 693 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 SIGLEC16A6NMB1 481 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 GOLGA6DP0CG33 693 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 GNAT1P11488 350 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 KLF1Q13351 362 aaPredicted RBP15.32■□□□□ 0.04
CLIP1-216ENST00000541410 IRF5Q13568 498 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 CDO1Q16878 200 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 FAM182AQ5T1J6 154 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 OR6B2Q6IFH4 312 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 TTC30AQ86WT1 665 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 UHMK1Q8TAS1 419 aaKnown RBP15.32■□□□□ 0.04
CLIP1-216ENST00000541410 SLITRK1Q96PX8 696 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 MTG1Q9BT17 334 aaPredicted RBP15.32■□□□□ 0.04
CLIP1-216ENST00000541410 DNAJC17Q9NVM6 304 aaKnown RBP15.32■□□□□ 0.04
CLIP1-216ENST00000541410 GOLGA6AQ9NYA3 693 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 SAE1Q9UBE0 346 aaPredicted RBP15.32■□□□□ 0.04
CLIP1-216ENST00000541410 ASIC3Q9UHC3 531 aa15.32■□□□□ 0.04
CLIP1-216ENST00000541410 A8MXQ7 604 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 LRCH4O75427 683 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 HMGCRP04035 888 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 FGFR1P11362 822 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 CCDC130P13994 396 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 ADORA2BP29275 332 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 GJA9P57773 515 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 DYNLT1P63172 113 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 PIGHQ14442 188 aaPredicted RBP15.31■□□□□ 0.04
CLIP1-216ENST00000541410 TTC19Q6DKK2 380 aaPredicted RBP15.31■□□□□ 0.04
CLIP1-216ENST00000541410 PMF1Q6P1K2 205 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 CCDC25Q86WR0 208 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 EXD1Q8NHP7 514 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 SH3GL2Q99962 352 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 B3GNT5Q9BYG0 378 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 GPBP1L1Q9HC44 474 aaPredicted RBP15.31■□□□□ 0.04
CLIP1-216ENST00000541410 GTF2IRD1Q9UHL9 959 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 UBQLN1Q9UMX0 589 aaKnown RBP15.31■□□□□ 0.04
CLIP1-216ENST00000541410 PODXLO00592 558 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 RARBP10826 455 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 MAN1A1P33908 653 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 FNTAP49354 379 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 MRPS6P82932 125 aaKnown RBP15.31■□□□□ 0.04
CLIP1-216ENST00000541410 DMTNQ08495 405 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 FBXO47Q5MNV8 452 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 TRNP1Q6NT89 227 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 FAM183BPQ6ZVS7 135 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 C12orf50Q8NA57 414 aaPredicted RBP15.31■□□□□ 0.04
CLIP1-216ENST00000541410 LRRC45Q96CN5 670 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 RNF186Q9NXI6 227 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.31■□□□□ 0.04
CLIP1-216ENST00000541410 ST3GAL5Q9UNP4 418 aa15.31■□□□□ 0.04
CLIP1-216ENST00000541410 TMEM88BA6NKF7 163 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 KPNA7A9QM74 516 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 OPA1O60313 960 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 CHRNA1P02708 482 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 ASGR1P07306 291 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 CD48P09326 243 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 AXLP30530 894 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 HOXC8P31273 242 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 C15orf59Q2T9L4 293 aaPredicted RBP15.3■□□□□ 0.04
CLIP1-216ENST00000541410 LCLAT1Q6UWP7 414 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 SCUBE3Q8IX30 993 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 EIF1ADQ8N9N8 165 aaKnown RBP15.3■□□□□ 0.04
CLIP1-216ENST00000541410 PWWP2AQ96N64 755 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 MIS12Q9H081 205 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 C10orf88Q9H8K7 445 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 XPNPEP3Q9NQH7 507 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 DERAQ9Y315 318 aa15.3■□□□□ 0.04
CLIP1-216ENST00000541410 M0QZ92 97 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 RPS6KA5O75582 802 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 STAU1O95793 577 aaKnown RBP15.29■□□□□ 0.04
CLIP1-216ENST00000541410 PRKAR2AP13861 404 aaKnown RBP15.29■□□□□ 0.04
CLIP1-216ENST00000541410 KCNA10Q16322 511 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 SPOCD1Q6ZMY3 1216 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 KBTBD7Q8WVZ9 684 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 HSPH1Q92598 858 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 PIRO00625 290 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 PTGESO14684 152 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 SEPT4O43236 478 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 MLH1P40692 756 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 ATP11AP98196 1134 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms