RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 NAMPTP43490 491 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 ZNF131P52739 623 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 MORC3Q14149 939 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 XKR4Q5GH76 650 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 KIAA1211LQ6NV74 962 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 ALKAL1Q6UXT8 129 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 PROSER1Q86XN7 944 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 ELMOD1Q8N336 334 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 DEFB124Q8NES8 71 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 BEST2Q8NFU1 509 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 HPS3Q969F9 1004 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 KIF12Q96FN5 646 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 TMEM209Q96SK2 561 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 NAT10Q9H0A0 1025 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 CCDC113Q9H0I3 377 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 DNAJC25Q9H1X3 360 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 TSPY26PQ9H489 355 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 SLITRK6Q9H5Y7 841 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 SLC8A2Q9UPR5 921 aa13.48□□□□□ -0.25
CLSTN3-208ENST00000538933 CITO14578 2027 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 APC2O95996 2303 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 PATE3B3GLJ2 98 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 H7C4K7 107 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 ACKR2O00590 384 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 SLC16A4O15374 487 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 ATG13O75143 517 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 RHOBTB1O94844 696 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 MAPTP10636 758 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 NMT1P30419 496 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 STRN3Q13033 797 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 MAPK7Q13164 816 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 PRPF4BQ13523 1007 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 ALCAMQ13740 583 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 TMEM132AQ24JP5 1023 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 KLHL10Q6JEL2 608 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 RNF19BQ6ZMZ0 732 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 GAREM2Q75VX8 874 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 PDZD3Q86UT5 571 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 SMYD4Q8IYR2 804 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 DAW1Q8N136 415 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 MLKLQ8NB16 471 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 FAM200AQ8TCP9 573 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 BBC3Q96PG8 261 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 FBRSL1Q9HCM7 1045 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 OLFML3Q9NRN5 406 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 OBP2AQ9NY56 170 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 EBF1Q9UH73 591 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 MAPK8IP1Q9UQF2 711 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 PCDHB13Q9Y5F0 798 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 ASXL3Q9C0F0 2248 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 PLXNB3Q9ULL4 1909 aa13.47□□□□□ -0.25
CLSTN3-208ENST00000538933 PHLPP2Q6ZVD8 1323 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 OTOL1A6NHN0 477 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 TRDMT1O14717 391 aaKnown RBP13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 PSMA7O14818 248 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 MEFVO15553 781 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 WEE1P30291 646 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 NPTX2P47972 431 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 ZNF445P59923 1031 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 IRX4P78413 519 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 STK4Q13043 487 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 ELF2Q15723 593 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 TPD52L1Q16890 204 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 ITPRIPL2Q3MIP1 535 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 ANO6Q4KMQ2 910 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 CTXN3Q4LDR2 81 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 C19orf48Q6RUI8 117 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 HAUS6Q7Z4H7 955 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 SYCP3Q8IZU3 236 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 SPIRE2Q8WWL2 714 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 BSNDQ8WZ55 320 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 ZMAT2Q96NC0 199 aaKnown RBP13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 HHIPQ96QV1 700 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 C2orf40Q9H1Z8 148 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 CRISPLD1Q9H336 500 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 EXOC7Q9UPT5 735 aa13.46□□□□□ -0.25
CLSTN3-208ENST00000538933 ZNF638Q14966 1978 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 UBE4BO95155 1302 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 KHNYNO15037 678 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 EIF3DO15371 548 aaKnown RBP eCLIP13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 PRPF6O94906 941 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 PRAMEF12O95522 483 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 SCP2P22307 547 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 EFNA5P52803 228 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 NCKAP1LP55160 1127 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 DPCR1Q3MIW9 517 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 PIP4P1Q86T03 277 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 NELFCDQ8IXH7 590 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 KIAA0895Q8NCT3 520 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 HVCN1Q96D96 273 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 BICD1Q96G01 975 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 SUSD3Q96L08 255 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 TSG101Q99816 390 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 FAM83CQ9BQN1 747 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 ADPGKQ9BRR6 497 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 KIFC3Q9BVG8 833 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 TMEM206Q9H813 350 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 CTNND2Q9UQB3 1225 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 YIPF1Q9Y548 306 aa13.45□□□□□ -0.26
CLSTN3-208ENST00000538933 ADAMTS9Q9P2N4 1935 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms