RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 AMIGO2Q86SJ2 522 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 PPM1NQ8N819 430 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 C1orf162Q8NEQ5 155 aaPredicted RBP2.31□□□□□ -2.04
CD44-212ENST00000524922 SEMA6DQ8NFY4 1073 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 NSUN6Q8TEA1 469 aaKnown RBP2.31□□□□□ -2.04
CD44-212ENST00000524922 SMG7Q92540 1137 aaKnown RBP2.31□□□□□ -2.04
CD44-212ENST00000524922 REPS1Q96D71 796 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 FBXL20Q96IG2 436 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 TMX3Q96JJ7 454 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 KRTAP2-2Q9BYT5 123 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 SMOC2Q9H3U7 446 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 NIPSNAP3AQ9UFN0 247 aaPredicted RBP2.31□□□□□ -2.04
CD44-212ENST00000524922 NEU2Q9Y3R4 380 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 SPATA31A3Q5VYP0 1347 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 NPHP3Q7Z494 1330 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 KANK1Q14678 1352 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 HFM1A2PYH4 1435 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 TECPR2O15040 1411 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 MYOM3Q5VTT5 1437 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 NWD2Q9ULI1 1742 aa2.31□□□□□ -2.04
CD44-212ENST00000524922 F2RL2O00254 374 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 CHRM2P08172 466 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 MTHFD1P11586 935 aaKnown RBP2.3□□□□□ -2.04
CD44-212ENST00000524922 DRD4P21917 467 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 SFPQP23246 707 aaKnown RBP eCLIP2.3□□□□□ -2.04
CD44-212ENST00000524922 HMGB2P26583 209 aaKnown RBP2.3□□□□□ -2.04
CD44-212ENST00000524922 KRT85P78386 507 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 FPGSQ05932 587 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 EIF2B5Q13144 721 aaKnown RBP2.3□□□□□ -2.04
CD44-212ENST00000524922 RAB39AQ14964 217 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 EPHA10Q5JZY3 1008 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 TAPT1Q6NXT6 567 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 PPP1R32Q7Z5V6 425 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 UNC5CLQ8IV45 518 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 CNTD1Q8N815 330 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 SNX19Q92543 992 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 COA7Q96BR5 231 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 PBKQ96KB5 322 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 OSBPL9Q96SU4 736 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 HEPHQ9BQS7 1158 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 AMBRA1Q9C0C7 1298 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 GPR35Q9HC97 309 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 KLC4Q9NSK0 619 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 SERTAD4Q9NUC0 356 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 TDP1Q9NUW8 608 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 CALCOCO1Q9P1Z2 691 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 DKK3Q9UBP4 350 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 ZBTB21Q9ULJ3 1066 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 AGAP1Q9UPQ3 857 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 BTBD3Q9Y2F9 522 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 ZNF804BA4D1E1 1349 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 CCDC144AA2RUR9 1427 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 C1orf167Q5SNV9 1468 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 TMEM131LA2VDJ0 1609 aa2.3□□□□□ -2.04
CD44-212ENST00000524922 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.3□□□□□ -2.04
CD44-212ENST00000524922 CACNA1IQ9P0X4 2223 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 RGPD1P0DJD0 1748 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 GLI3P10071 1580 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 PXDNQ92626 1479 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 RIMS2Q9UQ26 1411 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 SBNO1A3KN83 1393 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 BRD4O60885 1362 aaPredicted RBP2.29□□□□□ -2.04
CD44-212ENST00000524922 CCDC154A6NI56 674 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 TISP43B9A030 160 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 ZRANB2O95218 330 aaKnown RBP eCLIP2.29□□□□□ -2.04
CD44-212ENST00000524922 NPTX2P47972 431 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 NXPH1P58417 271 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 CREMQ03060 361 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 ITIH3Q06033 890 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 ZNF844Q08AG5 666 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 SNAPC2Q13487 334 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 BOP1Q14137 746 aaKnown RBP2.29□□□□□ -2.04
CD44-212ENST00000524922 PROSER3Q2NL68 480 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 AKNAD1Q5T1N1 836 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 KIAA1614Q5VZ46 1190 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 EGFLAMQ63HQ2 1017 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 ZNF626Q68DY1 528 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 DDX42Q86XP3 938 aaKnown RBP eCLIP2.29□□□□□ -2.04
CD44-212ENST00000524922 FAM90A1Q86YD7 464 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 PDSS2Q86YH6 399 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 RASAL3Q86YV0 1011 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 ZNF366Q8N895 744 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 VGLL2Q8N8G2 317 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 TOR1AIP2Q8NFQ8 470 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 KAT5Q92993 513 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 HDAC10Q969S8 669 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 FAXDC2Q96IV6 333 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 ZNF48Q96MX3 618 aaPredicted RBP2.29□□□□□ -2.04
CD44-212ENST00000524922 IMPG2Q9BZV3 1241 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 PUS7LQ9H0K6 701 aaKnown RBP2.29□□□□□ -2.04
CD44-212ENST00000524922 SERHLQ9NQF3 203 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 ST3GAL5Q9UNP4 418 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 WNT6Q9Y6F9 365 aa2.29□□□□□ -2.04
CD44-212ENST00000524922 CEP152O94986 1710 aa2.28□□□□□ -2.04
CD44-212ENST00000524922 LRRIQ1Q96JM4 1722 aa2.28□□□□□ -2.04
CD44-212ENST00000524922 GOLGB1Q14789 3259 aaKnown RBP2.28□□□□□ -2.04
CD44-212ENST00000524922 ARHGEF10O15013 1369 aa2.28□□□□□ -2.04
CD44-212ENST00000524922 DHX57Q6P158 1386 aaKnown RBP2.28□□□□□ -2.04
CD44-212ENST00000524922 KIF15Q9NS87 1388 aa2.28□□□□□ -2.04
CD44-212ENST00000524922 WASHC2AQ641Q2 1341 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms