RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 AEBP2Q6ZN18 517 aaPredicted RBP13.4□□□□□ -0.26
CD44-212ENST00000524922 CHIC1Q5VXU3 224 aa12.73□□□□□ -0.37
CD44-212ENST00000524922 SENP3Q9H4L4 574 aaPredicted RBP11.29□□□□□ -0.6
CD44-212ENST00000524922 PHF23Q9BUL5 403 aaPredicted RBP11.23□□□□□ -0.61
CD44-212ENST00000524922 FOXD1Q16676 465 aa10.59□□□□□ -0.71
CD44-212ENST00000524922 PLPPR3Q6T4P5 718 aa10.14□□□□□ -0.79
CD44-212ENST00000524922 PPP6R1Q9UPN7 881 aa10.01□□□□□ -0.81
CD44-212ENST00000524922 ADRA2BP18089 450 aa9.91□□□□□ -0.82
CD44-212ENST00000524922 PIAS4Q8N2W9 510 aaPredicted RBP9.83□□□□□ -0.84
CD44-212ENST00000524922 MSH5O43196 834 aa9.79□□□□□ -0.84
CD44-212ENST00000524922 POTEDQ86YR6 584 aa9.51□□□□□ -0.89
CD44-212ENST00000524922 MAPK8IP2Q13387 824 aaPredicted RBP9.11□□□□□ -0.95
CD44-212ENST00000524922 DMRT2Q9Y5R5 561 aa9.01□□□□□ -0.97
CD44-212ENST00000524922 SCAF1Q9H7N4 1312 aaKnown RBP8.95□□□□□ -0.98
CD44-212ENST00000524922 PPP4R3CPQ6ZMV5 832 aa8.92□□□□□ -0.98
CD44-212ENST00000524922 HOXD11P31277 338 aaPredicted RBP8.74□□□□□ -1.01
CD44-212ENST00000524922 CNKSR2Q8WXI2 1034 aa8.72□□□□□ -1.01
CD44-212ENST00000524922 RNF216Q9NWF9 866 aaPredicted RBP8.65□□□□□ -1.02
CD44-212ENST00000524922 NCBP3Q53F19 620 aaKnown RBP8.51□□□□□ -1.05
CD44-212ENST00000524922 NPM3O75607 178 aaKnown RBP8.5□□□□□ -1.05
CD44-212ENST00000524922 DCAF8L1A6NGE4 600 aa8.48□□□□□ -1.05
CD44-212ENST00000524922 RNF39Q9H2S5 420 aa8.45□□□□□ -1.06
CD44-212ENST00000524922 DNAJC5BQ9UF47 199 aa8.42□□□□□ -1.06
CD44-212ENST00000524922 KCNA4P22459 653 aa8.41□□□□□ -1.06
CD44-212ENST00000524922 CACNB1Q02641 598 aaPredicted RBP8.33□□□□□ -1.08
CD44-212ENST00000524922 C1QBPQ07021 282 aaKnown RBP8.27□□□□□ -1.09
CD44-212ENST00000524922 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.19□□□□□ -1.1
CD44-212ENST00000524922 SLC4A2P04920 1241 aa8.16□□□□□ -1.1
CD44-212ENST00000524922 U3KPZ7 1027 aaPredicted RBP8.14□□□□□ -1.11
CD44-212ENST00000524922 SPINK5Q9NQ38 1064 aaPredicted RBP8□□□□□ -1.13
CD44-212ENST00000524922 DSG3P32926 999 aa7.92□□□□□ -1.14
CD44-212ENST00000524922 SLC4A1APQ9BWU0 796 aaKnown RBP7.88□□□□□ -1.15
CD44-212ENST00000524922 CAPN15O75808 1086 aa7.87□□□□□ -1.15
CD44-212ENST00000524922 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.81□□□□□ -1.16
CD44-212ENST00000524922 HNRNPUL2Q1KMD3 747 aaKnown RBP7.81□□□□□ -1.16
CD44-212ENST00000524922 ZBTB22O15209 634 aa7.8□□□□□ -1.16
CD44-212ENST00000524922 MYCNP04198 464 aaPredicted RBP7.8□□□□□ -1.16
CD44-212ENST00000524922 SAMD1Q6SPF0 538 aaPredicted RBP7.8□□□□□ -1.16
CD44-212ENST00000524922 TRHP20396 242 aaPredicted RBP7.77□□□□□ -1.17
CD44-212ENST00000524922 FOXD4L1Q9NU39 408 aa7.77□□□□□ -1.17
CD44-212ENST00000524922 ZNF219Q9P2Y4 722 aaPredicted RBP7.77□□□□□ -1.17
CD44-212ENST00000524922 APLP2Q06481 763 aa7.75□□□□□ -1.17
CD44-212ENST00000524922 ABCB7O75027 752 aa7.73□□□□□ -1.17
CD44-212ENST00000524922 ATF5Q9Y2D1 282 aaPredicted RBP7.72□□□□□ -1.17
CD44-212ENST00000524922 POLA2Q14181 598 aa7.62□□□□□ -1.19
CD44-212ENST00000524922 ATXN8OSP0DMR3 200 aa7.53□□□□□ -1.2
CD44-212ENST00000524922 CSRNP3Q8WYN3 585 aa7.46□□□□□ -1.22
CD44-212ENST00000524922 RBM42Q9BTD8 480 aaKnown RBP7.45□□□□□ -1.22
CD44-212ENST00000524922 POTEHQ6S545 545 aa7.44□□□□□ -1.22
CD44-212ENST00000524922 ZBTB12Q9Y330 459 aaPredicted RBP7.41□□□□□ -1.22
CD44-212ENST00000524922 OSCARQ8IYS5 282 aa7.39□□□□□ -1.23
CD44-212ENST00000524922 MKRN4PQ13434 485 aaPredicted RBP7.38□□□□□ -1.23
CD44-212ENST00000524922 AKT1S1Q96B36 256 aa7.34□□□□□ -1.23
CD44-212ENST00000524922 CHRDL2Q6WN34 429 aa7.32□□□□□ -1.24
CD44-212ENST00000524922 REM2Q8IYK8 340 aaPredicted RBP7.3□□□□□ -1.24
CD44-212ENST00000524922 EHMT2Q96KQ7 1210 aa7.3□□□□□ -1.24
CD44-212ENST00000524922 SPDYE2BA6NHP3 402 aa7.24□□□□□ -1.25
CD44-212ENST00000524922 SPDYE6P0CI01 402 aa7.24□□□□□ -1.25
CD44-212ENST00000524922 FBLN2P98095 1184 aa7.24□□□□□ -1.25
CD44-212ENST00000524922 SPDYE2Q495Y8 402 aa7.24□□□□□ -1.25
CD44-212ENST00000524922 SSUH2Q9Y2M2 353 aa7.23□□□□□ -1.25
CD44-212ENST00000524922 PITPNM1O00562 1244 aa7.22□□□□□ -1.25
CD44-212ENST00000524922 PIP4P2Q8N4L2 257 aa7.19□□□□□ -1.26
CD44-212ENST00000524922 FXR2P51116 673 aaKnown RBP eCLIP7.17□□□□□ -1.26
CD44-212ENST00000524922 ZNF692Q9BU19 519 aaPredicted RBP7.13□□□□□ -1.27
CD44-212ENST00000524922 SPDYE1Q8NFV5 336 aaPredicted RBP7.07□□□□□ -1.28
CD44-212ENST00000524922 PABPN1Q86U42 306 aaKnown RBP eCLIP7.06□□□□□ -1.28
CD44-212ENST00000524922 EVX2Q03828 476 aa7.02□□□□□ -1.29
CD44-212ENST00000524922 CLEC11AQ9Y240 323 aa7.01□□□□□ -1.29
CD44-212ENST00000524922 SP7Q8TDD2 431 aaPredicted RBP7□□□□□ -1.29
CD44-212ENST00000524922 PRKAR2AP13861 404 aaKnown RBP6.99□□□□□ -1.29
CD44-212ENST00000524922 SPDYE4A6NLX3 237 aa6.95□□□□□ -1.3
CD44-212ENST00000524922 HAX1O00165 279 aa6.95□□□□□ -1.3
CD44-212ENST00000524922 CHADLQ6NUI6 762 aa6.95□□□□□ -1.3
CD44-212ENST00000524922 C19orf67A6NJJ6 358 aa6.94□□□□□ -1.3
CD44-212ENST00000524922 PRR29P0C7W0 189 aa6.93□□□□□ -1.3
CD44-212ENST00000524922 PROM2Q8N271 834 aa6.93□□□□□ -1.3
CD44-212ENST00000524922 CREBZFQ9NS37 354 aa6.88□□□□□ -1.31
CD44-212ENST00000524922 FARP1Q9Y4F1 1045 aaPredicted RBP6.86□□□□□ -1.31
CD44-212ENST00000524922 MNX1P50219 401 aaPredicted RBP6.83□□□□□ -1.32
CD44-212ENST00000524922 STAG3Q9UJ98 1225 aa6.83□□□□□ -1.32
CD44-212ENST00000524922 GABBR2O75899 941 aa6.79□□□□□ -1.32
CD44-212ENST00000524922 CD44P16070 742 aaKnown RBP6.76□□□□□ -1.33
CD44-212ENST00000524922 POTEIP0CG38 1075 aa6.73□□□□□ -1.33
CD44-212ENST00000524922 ZNF579Q8NAF0 562 aaKnown RBP6.72□□□□□ -1.33
CD44-212ENST00000524922 ZRANB1Q9UGI0 708 aa6.67□□□□□ -1.34
CD44-212ENST00000524922 FKBP8Q14318 412 aa6.66□□□□□ -1.34
CD44-212ENST00000524922 CLCN6P51797 869 aa6.65□□□□□ -1.34
CD44-212ENST00000524922 GALR2O43603 387 aaPredicted RBP6.64□□□□□ -1.35
CD44-212ENST00000524922 PHF12Q96QT6 1004 aa6.63□□□□□ -1.35
CD44-212ENST00000524922 NPM1P06748 294 aaKnown RBP eCLIP6.62□□□□□ -1.35
CD44-212ENST00000524922 CCDC61Q9Y6R9 512 aa6.6□□□□□ -1.35
CD44-212ENST00000524922 RASEFQ8IZ41 740 aa6.58□□□□□ -1.36
CD44-212ENST00000524922 MIER1Q8N108 512 aa6.57□□□□□ -1.36
CD44-212ENST00000524922 NUBP1P53384 320 aa6.56□□□□□ -1.36
CD44-212ENST00000524922 PELP1Q8IZL8 1130 aaKnown RBP6.55□□□□□ -1.36
CD44-212ENST00000524922 MS4A3Q96HJ5 214 aa6.55□□□□□ -1.36
CD44-212ENST00000524922 PAK3O75914 559 aaPredicted RBP6.54□□□□□ -1.36
CD44-212ENST00000524922 LHX8Q68G74 356 aa6.54□□□□□ -1.36
CD44-212ENST00000524922 KIF12Q96FN5 646 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms