RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CLDND1Q9NY35 253 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 AFF4Q9UHB7 1163 aaKnown RBP12.65□□□□□ -0.38
CUX1-210ENST00000497815 FBXW11Q9UKB1 542 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 PLXNA3P51805 1871 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 GLP2RO95838 553 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 C8AP07357 584 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 PAEPP09466 180 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 SRGAP2BP0DMP2 458 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 CYP2F1P24903 491 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 SOX5P35711 763 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 STAT1P42224 750 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 JAM2P57087 298 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 ARID5AQ03989 594 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 SMARCB1Q12824 385 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 ADAM15Q13444 863 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 GOLGA7BQ2TAP0 167 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 SGO2Q562F6 1265 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 PPP1R26Q5T8A7 1209 aaPredicted RBP12.64□□□□□ -0.39
CUX1-210ENST00000497815 SPECC1LQ69YQ0 1117 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 TMC6Q7Z403 805 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 SCN4BQ8IWT1 228 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 FAM71AQ8IYT1 594 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 FUKQ8N0W3 1084 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 C12orf76Q8N812 135 aaPredicted RBP12.64□□□□□ -0.39
CUX1-210ENST00000497815 SPPL2BQ8TCT7 592 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 C2orf15Q8WU43 125 aaKnown RBP12.64□□□□□ -0.39
CUX1-210ENST00000497815 TFAP2BQ92481 460 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 CASP10Q92851 521 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 NUP58Q9BVL2 599 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 APOL5Q9BWW9 433 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 KRT82Q9NSB4 513 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 CNTN6Q9UQ52 1028 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 DAAM1Q9Y4D1 1078 aa12.64□□□□□ -0.39
CUX1-210ENST00000497815 ATP8B3O60423 1300 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 ITIH6Q6UXX5 1313 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 FSD2A1L4K1 749 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 LRRC53A6NM62 1247 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 THAP12O43422 761 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 RFPL2O75678 378 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 HAPLN1P10915 354 aaPredicted RBP12.63□□□□□ -0.39
CUX1-210ENST00000497815 VDRP11473 427 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 GNA15P30679 374 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 CLCN1P35523 988 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 GRIK1P39086 918 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 GPR15P49685 360 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 CACNA2D1P54289 1103 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 DLX2Q07687 328 aaPredicted RBP12.63□□□□□ -0.39
CUX1-210ENST00000497815 TWF1Q12792 350 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 KCNC3Q14003 757 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 PPM1LQ5SGD2 360 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 SDHAF4Q5VUM1 108 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 ELMSAN1Q6PJG2 1045 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 CCDC149Q6ZUS6 474 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 PAQR9Q6ZVX9 377 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 FAM35AQ86V20 835 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 SLC47A2Q86VL8 602 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 TCEAL8Q8IYN2 117 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 GPR152Q8TDT2 470 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 BAP1Q92560 729 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 ZSWIM1Q9BR11 485 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 TTYH3Q9C0H2 523 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 PLEKHA4Q9H4M7 779 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 GRPEL1Q9HAV7 217 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 DPP7Q9UHL4 492 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 YIPF1Q9Y548 306 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.63□□□□□ -0.396e-7■□□□□ 10
CUX1-210ENST00000497815 INSL5Q9Y5Q6 135 aa12.63□□□□□ -0.39
CUX1-210ENST00000497815 TRANK1O15050 2925 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 O00370 1275 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 CCL16O15467 120 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 TBX10O75333 385 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 ZMYND10O75800 440 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 AP1G2O75843 785 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 ADCY5O95622 1261 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 LRG1P02750 347 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 GYPCP04921 128 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 CASP14P31944 242 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 ALDH1A3P47895 512 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 TUFMP49411 452 aaKnown RBP12.62□□□□□ -0.39
CUX1-210ENST00000497815 PTK2Q05397 1052 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 CLUL1Q15846 466 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 DDR2Q16832 855 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 CFAP221Q4G0U5 840 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 FIGNQ5HY92 759 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 RARS2Q5T160 578 aaKnown RBP12.62□□□□□ -0.39
CUX1-210ENST00000497815 TAF3Q5VWG9 929 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 ANKRD54Q6NXT1 300 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 TMC5Q6UXY8 1006 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 DRC7Q8IY82 874 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 STKLD1Q8NE28 680 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 MAFAQ8NHW3 353 aaPredicted RBP12.62□□□□□ -0.39
CUX1-210ENST00000497815 UBA3Q8TBC4 463 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 FEZF2Q8TBJ5 459 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 GIPC2Q8TF65 315 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 PABPC5Q96DU9 382 aaKnown RBP12.62□□□□□ -0.39
CUX1-210ENST00000497815 SMARCD1Q96GM5 515 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 MRFAP1L1Q96HT8 127 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 FUBP3Q96I24 572 aaKnown RBP eCLIP12.62□□□□□ -0.39
CUX1-210ENST00000497815 HNRNPABQ99729 332 aaKnown RBP12.62□□□□□ -0.39
CUX1-210ENST00000497815 ABCB6Q9NP58 842 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms