RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 ZNF775Q96BV0 537 aaPredicted RBP6.33□□□□□ -1.4
USP39-213ENST00000467885 CYFIP2Q96F07 1278 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 RNPC3Q96LT9 517 aaKnown RBP6.33□□□□□ -1.4
USP39-213ENST00000467885 EIF3CQ99613 913 aaKnown RBP6.33□□□□□ -1.4
USP39-213ENST00000467885 HNRNPABQ99729 332 aaKnown RBP6.33□□□□□ -1.4
USP39-213ENST00000467885 CLSTN3Q9BQT9 956 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 C17orf80Q9BSJ5 609 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 TTPALQ9BTX7 342 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 PBX4Q9BYU1 374 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 UBXN6Q9BZV1 441 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 ZCWPW1Q9H0M4 648 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 ISCUQ9H1K1 167 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 LHX5Q9H2C1 402 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 MTIF3Q9H2K0 278 aaKnown RBP6.33□□□□□ -1.4
USP39-213ENST00000467885 SNX25Q9H3E2 840 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 RXFP1Q9HBX9 757 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 ALG13Q9NP73 1137 aaKnown RBP6.33□□□□□ -1.4
USP39-213ENST00000467885 TMLHEQ9NVH6 421 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 ZNHIT6Q9NWK9 470 aaKnown RBP6.33□□□□□ -1.4
USP39-213ENST00000467885 DSEQ9UL01 958 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 CDH9Q9ULB4 789 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 PCDHGC3Q9UN70 934 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 REXO2Q9Y3B8 237 aaKnown RBP6.33□□□□□ -1.4
USP39-213ENST00000467885 PCDHB12Q9Y5F1 795 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 BACE2Q9Y5Z0 518 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 COL4A6Q14031 1691 aa6.33□□□□□ -1.4
USP39-213ENST00000467885 CARNS1A5YM72 827 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 RCCD1A6NED2 376 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 SOWAHDA6NJG2 315 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 O00370 1275 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 CLDN5O00501 218 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 THAP12O43422 761 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 BEST1O76090 585 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 ABLIM3O94929 683 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 NDUFA10O95299 355 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 VNN2O95498 520 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 ABL1P00519 1130 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 FTLP02792 175 aaPredicted RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 SOD2P04179 222 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 PTMAP06454 111 aaKnown RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 CA3P07451 260 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 CTSAP10619 480 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 ODC1P11926 461 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 BRD2P25440 801 aaKnown RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 SSTR3P32745 418 aaPredicted RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 CDH5P33151 784 aaPredicted RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 RPL34P49207 117 aaKnown RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 CDR1P51861 262 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 CYP27A1Q02318 531 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 YWHAHQ04917 246 aaPredicted RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 GFPT1Q06210 699 aaPredicted RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 ELAVL2Q12926 359 aaKnown RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 PTP4A2Q12974 167 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 GPR17Q13304 367 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 BMS1Q14692 1282 aaKnown RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 SLC18A3Q16572 532 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 CCDC142Q17RM4 750 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 SWT1Q5T5J6 900 aaKnown RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 TAF3Q5VWG9 929 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 OVOS1Q6IE37 1185 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 SLC8B1Q6J4K2 584 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 ACAD10Q6JQN1 1059 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 DENND1BQ6P3S1 775 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 ALKBH5Q6P6C2 394 aaKnown RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 LILRA6Q6PI73 481 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 PRSS55Q6UWB4 352 aaPredicted RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 ANKS3Q6ZW76 656 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 DNAAF5Q86Y56 855 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 FMNL3Q8IVF7 1028 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 REXO1L1PQ8IX06 675 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 FUKQ8N0W3 1084 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 VPS52Q8N1B4 723 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 ANKRD52Q8NB46 1076 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 TTC13Q8NBP0 860 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 B3GALNT2Q8NCR0 500 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 PIK3R5Q8WYR1 880 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 TNIP3Q96KP6 325 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 CCDC42Q96M95 316 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 TMUB1Q9BVT8 246 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 PLVAPQ9BX97 442 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 DUSP16Q9BY84 665 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 CSNK1G1Q9HCP0 422 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 AAASQ9NRG9 546 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 TAS2R14Q9NYV8 317 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 CYTH4Q9UIA0 394 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 NAGPAQ9UK23 515 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 PYCARDQ9ULZ3 195 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 LZTS1Q9Y250 596 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 ARIH1Q9Y4X5 557 aaPredicted RBP6.32□□□□□ -1.4
USP39-213ENST00000467885 PCDHA13Q9Y5I0 950 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 IRAK3Q9Y616 596 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 ADGRG1Q9Y653 693 aa6.32□□□□□ -1.4
USP39-213ENST00000467885 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP39-213ENST00000467885 SF3B1O75533 1304 aaKnown RBP eCLIP6.31□□□□□ -1.4
USP39-213ENST00000467885 ALPK3Q96L96 1907 aa6.31□□□□□ -1.4
USP39-213ENST00000467885 A0A0U1RQJ8 604 aa6.31□□□□□ -1.4
USP39-213ENST00000467885 ARHGEF37A1IGU5 675 aa6.31□□□□□ -1.4
USP39-213ENST00000467885 OR6C75A6NL08 312 aa6.31□□□□□ -1.4
USP39-213ENST00000467885 HHLA1C9JL84 531 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms