RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 B3GNT5Q9BYG0 378 aa11.84□□□□□ -0.51
VCP-204ENST00000466100 ENTPD7Q9NQZ7 604 aa11.84□□□□□ -0.51
VCP-204ENST00000466100 FAM49BQ9NUQ9 324 aa11.84□□□□□ -0.51
VCP-204ENST00000466100 TMEM30AQ9NV96 361 aa11.84□□□□□ -0.51
VCP-204ENST00000466100 PCDHGC3Q9UN70 934 aa11.84□□□□□ -0.51
VCP-204ENST00000466100 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.84□□□□□ -0.51
VCP-204ENST00000466100 OBSL1O75147 1896 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 MTMR11A4FU01 709 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 THAP12O43422 761 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 ABLIM3O94929 683 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 SERPING1P05155 500 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 CCDC172P0C7W6 258 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 SKILP12757 684 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 CD19P15391 556 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 OR1D2P34982 312 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 NDUFV1P49821 464 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 PDE6CP51160 858 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 CACNA2D1P54289 1103 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 FMO1Q01740 532 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 CDR2Q01850 454 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 KLHL30Q0D2K2 578 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 MAPK8IP2Q13387 824 aaPredicted RBP11.83□□□□□ -0.52
VCP-204ENST00000466100 MAPRE1Q15691 268 aaKnown RBP11.83□□□□□ -0.52
VCP-204ENST00000466100 CNGA2Q16280 664 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 ASTE1Q2TB18 679 aaPredicted RBP11.83□□□□□ -0.52
VCP-204ENST00000466100 CFAP221Q4G0U5 840 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 PDE12Q6L8Q7 609 aaKnown RBP11.83□□□□□ -0.52
VCP-204ENST00000466100 LCLAT1Q6UWP7 414 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 RNF19BQ6ZMZ0 732 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 FAM35AQ86V20 835 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 TTC30AQ86WT1 665 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 ZNF677Q86XU0 584 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 DCP1BQ8IZD4 617 aaKnown RBP11.83□□□□□ -0.52
VCP-204ENST00000466100 SLC2A14Q8TDB8 520 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 CYFIP2Q96F07 1278 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 FUBP3Q96I24 572 aaKnown RBP eCLIP11.83□□□□□ -0.52
VCP-204ENST00000466100 LRCH3Q96II8 777 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 HEXIM2Q96MH2 286 aaKnown RBP11.83□□□□□ -0.52
VCP-204ENST00000466100 KLHL5Q96PQ7 755 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 CHP1Q99653 195 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 ZNF518BQ9C0D4 1074 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 CRISPLD1Q9H336 500 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 HAUS4Q9H6D7 363 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 TSPAN16Q9UKR8 245 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 NENFQ9UMX5 172 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 BZW2Q9Y6E2 419 aaKnown RBP11.83□□□□□ -0.52
VCP-204ENST00000466100 DENND4CQ5VZ89 1909 aa11.83□□□□□ -0.52
VCP-204ENST00000466100 DOCK6Q96HP0 2047 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 CLDN5O00501 218 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 MICAL2O94851 1124 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 CSPG5O95196 566 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 MMEP08473 750 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 CPB1P15086 417 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 CDH5P33151 784 aaPredicted RBP11.82□□□□□ -0.52
VCP-204ENST00000466100 SMARCB1Q12824 385 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 STILQ15468 1287 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 NFE2Q16621 373 aaPredicted RBP11.82□□□□□ -0.52
VCP-204ENST00000466100 GOLGA7BQ2TAP0 167 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 TAF3Q5VWG9 929 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 TPGS2Q68CL5 300 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 DENND1BQ6P3S1 775 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 LILRA6Q6PI73 481 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 ADGRD2Q7Z7M1 963 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 PALB2Q86YC2 1186 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 GLYCTKQ8IVS8 523 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 SLC30A5Q8TAD4 765 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 C2orf15Q8WU43 125 aaKnown RBP11.82□□□□□ -0.52
VCP-204ENST00000466100 MRPL38Q96DV4 380 aaKnown RBP11.82□□□□□ -0.52
VCP-204ENST00000466100 PCDHB18PQ96TA0 734 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 AGPAT1Q99943 283 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 RHOBTB2Q9BYZ6 727 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 DNAI2Q9GZS0 605 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 ABCB6Q9NP58 842 aa11.82□□□□□ -0.52
VCP-204ENST00000466100 COL6A3P12111 3177 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 C2orf16Q68DN1 1984 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 NOTCH4Q99466 2003 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 SSU72P8A0A1W2PR75 194 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 GOLGA6L6A8MZA4 724 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 DDX3XO00571 662 aaKnown RBP eCLIP11.81□□□□□ -0.52
VCP-204ENST00000466100 MED7O43513 233 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 C1RP00736 705 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 ADH1AP07327 375 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 ATF2P15336 505 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 ANXA13P27216 316 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 ADORA2BP29275 332 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 SSTR3P32745 418 aaPredicted RBP11.81□□□□□ -0.52
VCP-204ENST00000466100 EIF4A3P38919 411 aaKnown RBP11.81□□□□□ -0.52
VCP-204ENST00000466100 GPD2P43304 727 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 MAGEA11P43364 429 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 CLCN4P51793 760 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 CDR1P51861 262 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 CYP27A1Q02318 531 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 GRIN2CQ14957 1233 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 TDRD12Q587J7 1177 aaKnown RBP11.81□□□□□ -0.52
VCP-204ENST00000466100 C4orf50Q6ZRC1 276 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 CLEC20AQ6ZU45 233 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 WDTC1Q8N5D0 677 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 TTC9BQ8N6N2 239 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 ANKRD52Q8NB46 1076 aa11.81□□□□□ -0.52
VCP-204ENST00000466100 ATAD1Q8NBU5 361 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms