RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 HLXQ14774 488 aaPredicted RBP4.92□□□□□ -1.62
USP40-209ENST00000452724 SLC44A4Q53GD3 710 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 MICALCLQ6ZW33 695 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 BOLLQ8N9W6 283 aaKnown RBP4.92□□□□□ -1.62
USP40-209ENST00000452724 FBXO41Q8TF61 875 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 MAML1Q92585 1016 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 MOGAT1Q96PD6 335 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 ZNF518BQ9C0D4 1074 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 TTYH3Q9C0H2 523 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 R3HDMLQ9H3Y0 253 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 SACM1LQ9NTJ5 587 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 PAXBP1Q9Y5B6 917 aa4.92□□□□□ -1.62
USP40-209ENST00000452724 ANO9A1A5B4 782 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 TRIM43BA6NCK2 446 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 DCLK1O15075 740 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 PMM2O15305 246 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 NBPF7P0C2Y1 421 aaPredicted RBP4.91□□□□□ -1.62
USP40-209ENST00000452724 ATXN1LP0C7T5 689 aaKnown RBP4.91□□□□□ -1.62
USP40-209ENST00000452724 SLC5A1P13866 664 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 ZKSCAN1P17029 563 aaPredicted RBP4.91□□□□□ -1.62
USP40-209ENST00000452724 RPL17P18621 184 aaKnown RBP4.91□□□□□ -1.62
USP40-209ENST00000452724 NPTX2P47972 431 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 NDUFV1P49821 464 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 ZNF169Q14929 603 aaPredicted RBP4.91□□□□□ -1.62
USP40-209ENST00000452724 IQCB1Q15051 598 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 MAP9Q49MG5 647 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 FAM9AQ8IZU1 332 aaPredicted RBP4.91□□□□□ -1.62
USP40-209ENST00000452724 MPP5Q8N3R9 675 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 TRIM43Q96BQ3 446 aaPredicted RBP4.91□□□□□ -1.62
USP40-209ENST00000452724 NMD3Q96D46 503 aaKnown RBP4.91□□□□□ -1.62
USP40-209ENST00000452724 AIFM2Q9BRQ8 373 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 INTS13Q9NVM9 706 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 SNX13Q9Y5W8 968 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 SPATA31A3Q5VYP0 1347 aa4.91□□□□□ -1.62
USP40-209ENST00000452724 A0A0B4J269 797 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 TMEM233B4DJY2 109 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 F5H697 171 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 PLIN1O60240 522 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 CYP2C9P11712 490 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 XRCC6P12956 609 aaKnown RBP eCLIP4.9□□□□□ -1.63
USP40-209ENST00000452724 GATA3P23771 443 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 ZNF134P52741 427 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 WNT3P56703 355 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 TUBB3Q13509 450 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 C3orf38Q5JPI3 329 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 LAYNQ6UX15 382 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 SESTD1Q86VW0 696 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 MICU3Q86XE3 530 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 ACTRT2Q8TDY3 377 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 SSH3Q8TE77 659 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 PHKBQ93100 1093 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 MS4A7Q9GZW8 240 aaPredicted RBP4.9□□□□□ -1.63
USP40-209ENST00000452724 A1CFQ9NQ94 594 aaKnown RBP4.9□□□□□ -1.63
USP40-209ENST00000452724 KCTD5Q9NXV2 234 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 CORO2BQ9UQ03 480 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 SHOC2Q9UQ13 582 aa4.9□□□□□ -1.63
USP40-209ENST00000452724 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.9□□□□□ -1.63
USP40-209ENST00000452724 RHPN2P1A8MT19 583 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 FOXN3O00409 490 aaPredicted RBP4.89□□□□□ -1.63
USP40-209ENST00000452724 TRIAP1O43715 76 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 PEX1O43933 1283 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 CDK4P11802 303 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 CD6P30203 668 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 PIK3CBP42338 1070 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 PXNP49023 591 aaPredicted RBP4.89□□□□□ -1.63
USP40-209ENST00000452724 RARRES1P49788 294 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 LOXL3P58215 753 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 LILRA4P59901 499 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 RPS16P62249 146 aaKnown RBP4.89□□□□□ -1.63
USP40-209ENST00000452724 SIM1P81133 766 aaPredicted RBP4.89□□□□□ -1.63
USP40-209ENST00000452724 KRTAP1-1Q07627 177 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 PICALMQ13492 652 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 DCAF12L1Q5VU92 463 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 ZKSCAN2Q63HK3 967 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 IL31Q6EBC2 164 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 TMEM108Q6UXF1 575 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 C11orf96Q7Z7L8 435 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 LNX2Q8N448 690 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 OR56A3Q8NH54 315 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 NTN5Q8WTR8 489 aaPredicted RBP4.89□□□□□ -1.63
USP40-209ENST00000452724 MSLNLQ96KJ4 702 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 OSBPL9Q96SU4 736 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 MESP1Q9BRJ9 268 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 COL20A1Q9P218 1284 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 SLC17A6Q9P2U8 582 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 TNFRSF18Q9Y5U5 241 aa4.89□□□□□ -1.63
USP40-209ENST00000452724 CCDC194A0A1B0GVG4 234 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 MBD3L4A6NDZ8 208 aaPredicted RBP4.88□□□□□ -1.63
USP40-209ENST00000452724 MBD3L3A6NE82 208 aaPredicted RBP4.88□□□□□ -1.63
USP40-209ENST00000452724 PYCARD-AS1I3L0S3 204 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 MYL3P08590 195 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 SRGNP10124 158 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 KLRC1P26715 233 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 CACNA2D1P54289 1103 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 SATB1Q01826 763 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 IFIT5Q13325 482 aaKnown RBP4.88□□□□□ -1.63
USP40-209ENST00000452724 SF3B3Q15393 1217 aaKnown RBP4.88□□□□□ -1.63
USP40-209ENST00000452724 RBM20Q5T481 1227 aaKnown RBP4.88□□□□□ -1.63
USP40-209ENST00000452724 GAS2L3Q86XJ1 694 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 SLC30A5Q8TAD4 765 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms