RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YGR039WP53225 103 aa1.63□□□□□ -2.15
UPF3YGR072W COF1Q03048 143 aaKnown RBP1.63□□□□□ -2.15
UPF3YGR072W BEM2P39960 2167 aaKnown RBP1.62□□□□□ -2.15
UPF3YGR072W VAR1P02381 398 aa1.62□□□□□ -2.15
UPF3YGR072W DDR48P18899 430 aaKnown RBP1.62□□□□□ -2.15
UPF3YGR072W SRP21P32342 167 aa1.62□□□□□ -2.15
UPF3YGR072W MRPL15P36523 253 aa1.62□□□□□ -2.15
UPF3YGR072W YMR320WQ04897 101 aa1.62□□□□□ -2.15
UPF3YGR072W SCS22Q6Q595 175 aa1.62□□□□□ -2.15
UPF3YGR072W GIM4P40005 111 aaKnown RBP1.61□□□□□ -2.15
UPF3YGR072W YHR212W-AP0CX91 67 aa1.6□□□□□ -2.15
UPF3YGR072W SUI1P32911 108 aaKnown RBP1.6□□□□□ -2.15
UPF3YGR072W ECM31P38122 312 aa1.6□□□□□ -2.15
UPF3YGR072W CYC2P38909 366 aa1.6□□□□□ -2.15
UPF3YGR072W YEL014CP39999 101 aa1.6□□□□□ -2.15
UPF3YGR072W APS3P47064 194 aa1.6□□□□□ -2.15
UPF3YGR072W VMA10P48836 114 aaKnown RBP1.6□□□□□ -2.15
UPF3YGR072W SPG1P50088 95 aa1.6□□□□□ -2.15
UPF3YGR072W YGL230CP53074 147 aa1.6□□□□□ -2.15
UPF3YGR072W YGL204CP53089 101 aa1.6□□□□□ -2.15
UPF3YGR072W YGR042WP53227 271 aa1.6□□□□□ -2.15
UPF3YGR072W CSN9Q03981 162 aa1.6□□□□□ -2.15
UPF3YGR072W FIT1Q04433 528 aa1.6□□□□□ -2.15
UPF3YGR072W AVO2Q04749 426 aa1.6□□□□□ -2.15
UPF3YGR072W SPC2Q04969 178 aa1.6□□□□□ -2.15
UPF3YGR072W IRC19Q07843 230 aa1.6□□□□□ -2.15
UPF3YGR072W DUR1,2P32528 1835 aaKnown RBP1.59□□□□□ -2.15
UPF3YGR072W SHB17P36136 271 aaKnown RBP1.59□□□□□ -2.15
UPF3YGR072W POP7P38291 140 aa1.59□□□□□ -2.15
UPF3YGR072W PHB1P40961 287 aa1.59□□□□□ -2.15
UPF3YGR072W YMR007WQ03675 126 aa1.59□□□□□ -2.15
UPF3YGR072W GLC8P41818 229 aa1.58□□□□□ -2.16
UPF3YGR072W SPC3Q12133 184 aa1.58□□□□□ -2.16
UPF3YGR072W KIN28P06242 306 aa1.57□□□□□ -2.16
UPF3YGR072W AQY2P0CD90 149 aa1.57□□□□□ -2.16
UPF3YGR072W LSM8P47093 109 aaKnown RBP1.57□□□□□ -2.16
UPF3YGR072W VAM10Q08474 114 aa1.57□□□□□ -2.16
UPF3YGR072W YPR203WQ08994 102 aa1.57□□□□□ -2.16
UPF3YGR072W ATP14Q12349 124 aa1.57□□□□□ -2.16
UPF3YGR072W HYP2P23301 157 aaKnown RBP1.56□□□□□ -2.16
UPF3YGR072W SUA7P29055 345 aaPredicted RBP1.56□□□□□ -2.16
UPF3YGR072W YKR070WP36151 352 aaKnown RBP1.56□□□□□ -2.16
UPF3YGR072W DIE2P50076 525 aa1.56□□□□□ -2.16
UPF3YGR072W YPR153WQ06537 140 aa1.56□□□□□ -2.16
UPF3YGR072W RIB3Q99258 208 aa1.56□□□□□ -2.16
UPF3YGR072W ACP1P32463 125 aa1.55□□□□□ -2.16
UPF3YGR072W HSP150P32478 413 aa1.55□□□□□ -2.16
UPF3YGR072W DCV1P43595 202 aa1.55□□□□□ -2.16
UPF3YGR072W EMC4P53073 190 aa1.55□□□□□ -2.16
UPF3YGR072W GPI11Q06636 219 aa1.55□□□□□ -2.16
UPF3YGR072W RAF1Q06891 181 aa1.55□□□□□ -2.16
UPF3YGR072W FCY1Q12178 158 aa1.55□□□□□ -2.16
UPF3YGR072W CMC4Q3E7A9 73 aa1.55□□□□□ -2.16
UPF3YGR072W NHP6AP11632 93 aaKnown RBP1.54□□□□□ -2.16
UPF3YGR072W YHL037CP38733 133 aa1.54□□□□□ -2.16
UPF3YGR072W IPT1P38954 527 aa1.54□□□□□ -2.16
UPF3YGR072W YFL051CP43552 160 aa1.54□□□□□ -2.16
UPF3YGR072W YNL019CP53975 284 aa1.54□□□□□ -2.16
UPF3YGR072W YDR278CQ05612 105 aa1.54□□□□□ -2.16
UPF3YGR072W HUT1Q12520 339 aa1.54□□□□□ -2.16
UPF3YGR072W YBR027CP38220 110 aa1.53□□□□□ -2.16
UPF3YGR072W YHR140WP38842 239 aa1.53□□□□□ -2.16
UPF3YGR072W YGR017WP53210 297 aa1.53□□□□□ -2.16
UPF3YGR072W DDP1Q99321 188 aaKnown RBP1.53□□□□□ -2.16
UPF3YGR072W RPS1BP23248 255 aaKnown RBP1.52□□□□□ -2.17
UPF3YGR072W YCL001W-AP87012 153 aa1.52□□□□□ -2.17
UPF3YGR072W YNL277W-AQ3E7Z0 62 aa1.52□□□□□ -2.17
UPF3YGR072W ACC1Q00955 2233 aaKnown RBP1.52□□□□□ -2.17
UPF3YGR072W MRPL44P19956 98 aa1.51□□□□□ -2.17
UPF3YGR072W YAR064WP39563 99 aa1.51□□□□□ -2.17
UPF3YGR072W SOM1Q05676 74 aa1.51□□□□□ -2.17
UPF3YGR072W NAT5Q08689 176 aa1.51□□□□□ -2.17
UPF3YGR072W YLR361C-AQ3E795 98 aa1.51□□□□□ -2.17
UPF3YGR072W COX5BP00425 151 aa1.5□□□□□ -2.17
UPF3YGR072W FYV5P25585 152 aa1.5□□□□□ -2.17
UPF3YGR072W SRL3P36167 246 aa1.5□□□□□ -2.17
UPF3YGR072W PRS3P38689 320 aaKnown RBP1.5□□□□□ -2.17
UPF3YGR072W RPS20P38701 121 aaKnown RBP1.5□□□□□ -2.17
UPF3YGR072W CNL1Q06333 122 aa1.5□□□□□ -2.17
UPF3YGR072W YIL102CP40488 101 aa1.49□□□□□ -2.17
UPF3YGR072W MPC1P53157 130 aaKnown RBP1.49□□□□□ -2.17
UPF3YGR072W SED1Q01589 338 aa1.49□□□□□ -2.17
UPF3YGR072W ELC1Q03071 99 aa1.49□□□□□ -2.17
UPF3YGR072W YOR385WQ08909 290 aa1.49□□□□□ -2.17
UPF3YGR072W MHF1Q3E835 90 aa1.49□□□□□ -2.17
UPF3YGR072W FMP49A0A023PZB3 126 aa1.48□□□□□ -2.17
UPF3YGR072W RPS1AP33442 255 aaKnown RBP1.48□□□□□ -2.17
UPF3YGR072W RPL14AP36105 138 aaKnown RBP1.48□□□□□ -2.17
UPF3YGR072W RPL14BP38754 138 aaKnown RBP1.48□□□□□ -2.17
UPF3YGR072W HUA1P40325 198 aa1.48□□□□□ -2.17
UPF3YGR072W HPM1P40481 377 aa1.48□□□□□ -2.17
UPF3YGR072W DYN2Q02647 92 aa1.48□□□□□ -2.17
UPF3YGR072W NKP2Q06162 153 aa1.48□□□□□ -2.17
UPF3YGR072W UBR1P19812 1950 aa1.48□□□□□ -2.17
UPF3YGR072W ATG8P38182 117 aaRIP-Chip data1.47□□□□□ -2.17not detected
UPF3YGR072W Q0144Q9ZZW2 109 aa1.47□□□□□ -2.17
UPF3YGR072W RPL33AP05744 107 aaKnown RBP1.46□□□□□ -2.18
UPF3YGR072W YCR050CP25630 102 aa1.46□□□□□ -2.18
UPF3YGR072W SFT2P38166 215 aa1.46□□□□□ -2.18
UPF3YGR072W TMA23Q03525 211 aa1.46□□□□□ -2.18
Retrieved 100 of 5,963 RNA–protein pairs in 85.6 ms