RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 GOLGA6CA6NDK9 693 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 GOLGA6L10A6NI86 522 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 NDC80O14777 642 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 PPFIA2O75334 1257 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 MICAL2O94851 1124 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 GAS8O95995 478 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 GOLGA6DP0CG33 693 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 HOXC8P31273 242 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 SSTR3P32745 418 aaPredicted RBP11.9□□□□□ -0.5
LIG3-204ENST00000585740 SCN1AP35498 2009 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 PNPLA4P41247 253 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 GABRB2P47870 512 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 CDH8P55286 799 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 EIF3BP55884 814 aaKnown RBP11.9□□□□□ -0.5
LIG3-204ENST00000585740 FCGRTP55899 365 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 TAS2R40P59535 323 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 PSMC1P62191 440 aaKnown RBP11.9□□□□□ -0.5
LIG3-204ENST00000585740 CAV1Q03135 178 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 SNX17Q15036 470 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 PPP1R7Q15435 360 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 ZBTB6Q15916 424 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 CCNG2Q16589 344 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 CCL14Q16627 93 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 HADHQ16836 314 aaKnown RBP11.9□□□□□ -0.5
LIG3-204ENST00000585740 C2CD6Q53TS8 623 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 TTC27Q6P3X3 843 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 RUFY4Q6ZNE9 571 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 POLNQ7Z5Q5 900 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 CROCCP2Q86T23 111 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 UNC93AQ86WB7 457 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 DDX42Q86XP3 938 aaKnown RBP eCLIP11.9□□□□□ -0.5
LIG3-204ENST00000585740 BBOF1Q8ND07 529 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 ATL2Q8NHH9 583 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 DNAJB3Q8WWF6 145 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 HEXIM2Q96MH2 286 aaKnown RBP11.9□□□□□ -0.5
LIG3-204ENST00000585740 ZNF560Q96MR9 790 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 MCEEQ96PE7 176 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 MTG1Q9BT17 334 aaPredicted RBP11.9□□□□□ -0.5
LIG3-204ENST00000585740 NT5C1AQ9BXI3 368 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 OSBPL8Q9BZF1 889 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 TRIM7Q9C029 511 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 DCLK3Q9C098 648 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 TSPYL1Q9H0U9 437 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 SYNCQ9H7C4 482 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 FAM204AQ9H8W3 233 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 SNTG2Q9NY99 539 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 GOLGA6AQ9NYA3 693 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.9□□□□□ -0.5
LIG3-204ENST00000585740 HTTP42858 3142 aa11.9□□□□□ -0.5
LIG3-204ENST00000585740 SCN10AQ9Y5Y9 1956 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 M0QYV0 167 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 M0QZ92 97 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 O00370 1275 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 TJP3O95049 919 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 ALDH1A1P00352 501 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 KRT7P08729 469 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 KRT3P12035 628 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 KCNE1P15382 129 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 CYP3A5P20815 502 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 FGFR4P22455 802 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 PSMA2P25787 234 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 HSD17B3P37058 310 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 NDST1P52848 882 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 GJA9P57773 515 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 PURAQ00577 322 aaKnown RBP11.89□□□□□ -0.51
LIG3-204ENST00000585740 CALCOCO2Q13137 446 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 PTK6Q13882 451 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 SLMAPQ14BN4 828 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 TRADDQ15628 312 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 PTPN20Q4JDL3 420 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 LLGL2Q6P1M3 1020 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 LCLAT1Q6UWP7 414 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 ALKAL1Q6UXT8 129 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 CEP128Q6ZU80 1094 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 TMC3Q7Z5M5 1100 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 RSPH3Q86UC2 560 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 C7orf31Q8N865 590 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 CCHCR1Q8TD31 782 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 MCRS1Q96EZ8 462 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 NCAPGQ9BPX3 1015 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 CFHR5Q9BXR6 569 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 FRMD8P1Q9BZ68 369 aaPredicted RBP11.89□□□□□ -0.51
LIG3-204ENST00000585740 NEUROG2Q9H2A3 272 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 WHRNQ9P202 907 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 COLQQ9Y215 455 aaPredicted RBP11.89□□□□□ -0.51
LIG3-204ENST00000585740 GINS2Q9Y248 185 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 PLAAQ9Y263 795 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 EFR3BQ9Y2G0 817 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 SNX24Q9Y343 169 aa11.89□□□□□ -0.51
LIG3-204ENST00000585740 CENPFP49454 3210 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 TCRBV7S2A1N4TA0A589 114 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 HMGB1P1B2RPK0 211 aaPredicted RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 TREHO43280 583 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 RECQL4O94761 1208 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 KRT1P04264 644 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 FAM163BP0C2L3 166 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 RALAP11233 206 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 DESP17661 470 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 EN2P19622 333 aaPredicted RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 ITIH2P19823 946 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms