RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 TGS1Q96RS0 853 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 GAD1Q99259 594 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 IL12RB2Q99665 862 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RHOXF2Q9BQY4 288 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 GTPBP2Q9BX10 602 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ELOVL4Q9GZR5 314 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 NIF3L1Q9GZT8 377 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 A1CFQ9NQ94 594 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 DDIT4Q9NX09 232 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 GULP1Q9UBP9 304 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ANAPC7Q9UJX3 599 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 BCL9O00512 1426 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PDS5AQ29RF7 1337 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 HNRNPCL2B2RXH8 293 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 HNRNPCL1O60812 293 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ECEL1O95672 775 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 IGSF6O95976 241 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RPN2P04844 631 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 USP17L7P0C7H9 530 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SMIM10L2AP0DMW4 78 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SMIM10L2BP0DMW5 78 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MCF2P10911 925 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ITGALP20701 1170 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RRM1P23921 792 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 STX2P32856 288 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RFC2P35250 354 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ATP5C1P36542 298 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RPIAP49247 311 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SCNN1BP51168 640 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MARSP56192 900 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 OCRLQ01968 901 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CNTN2Q02246 1040 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 XRCC4Q13426 336 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ARID5BQ14865 1188 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 FAM47EQ6ZV65 393 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 VSIG1Q86XK7 387 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CATSPER3Q86XQ3 398 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 FAM133AQ8N9E0 248 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 HELQQ8TDG4 1101 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TFB1MQ8WVM0 346 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 FAR2Q96K12 515 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MAP3K14Q99558 947 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PHF20Q9BVI0 1012 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 LSG1Q9H089 658 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TMEM117Q9H0C3 514 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 NDST4Q9H3R1 872 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 OSBPL3Q9H4L5 887 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 HAUS4Q9H6D7 363 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 NMRK1Q9NWW6 199 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 DDX43Q9NXZ2 648 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 HSPBP1Q9NZL4 362 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ABI3Q9P2A4 366 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 NRBP1Q9UHY1 535 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 FIS1Q9Y3D6 152 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PTCH2Q9Y6C5 1203 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D3DA0A087WVF3 549 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D3IA0A087WXS9 549 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D3EA0A087X179 549 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D3KA0A087X1G2 549 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CCDC189A1A4V9 331 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D3FA6NER0 549 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 C2orf81A6NN90 581 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D3LB9A6J9 549 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 POC1B-GALNT4F8VUJ3 575 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SPECC1L-ADORA2AF8WAN1 911 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 H3BM21 787 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CBX4O00257 560 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 NFIBO00712 420 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 APOL1O14791 398 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RGS16O15492 202 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D12O60347 775 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 BUB1BO60566 1050 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RASSF9O75901 435 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 BMP10O95393 424 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D3HP0C7X1 549 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PYGMP11217 842 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ALOX15P16050 662 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PTPN2P17706 415 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MZF1P28698 734 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 EPHB2P29323 1055 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CD52P31358 61 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ERVK-21P61565 698 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SMARCB1Q12824 385 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PDCLQ13371 301 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SLMAPQ14BN4 828 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TOMM20Q15388 145 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ZSCAN23Q3MJ62 389 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 DUSP28Q4G0W2 176 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ZRANB3Q5FWF4 1079 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 AARS2Q5JTZ9 985 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 HECTD3Q5T447 861 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 C6orf118Q5T5N4 469 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D3GQ6DHY5 549 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D3CQ6IPX1 549 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC24A5Q71RS6 500 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MTSS1LQ765P7 747 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ATG9AQ7Z3C6 839 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SKAP1Q86WV1 359 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 GPR135Q8IZ08 494 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D3Q8IZP1 549 aaPredicted RBP3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms