RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 P4HA1P13674 534 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 ZNF18P17022 549 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 PTPN1P18031 435 aaKnown RBP20.87■□□□□ 0.93
CLN3-225ENST00000566824 PCSK1P29120 753 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 ELF1P32519 619 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 IQCB1Q15051 598 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 KRT31Q15323 416 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 MDH1BQ5I0G3 518 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 WDR44Q5JSH3 913 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 ACOT1Q86TX2 421 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 DCP1BQ8IZD4 617 aaKnown RBP20.87■□□□□ 0.93
CLN3-225ENST00000566824 SMG7Q92540 1137 aaKnown RBP20.87■□□□□ 0.93
CLN3-225ENST00000566824 BPIFA3Q9BQP9 254 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 ELOVL4Q9GZR5 314 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 POMKQ9H5K3 350 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 ZDHHC7Q9NXF8 308 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 NRG2O14511 850 aaPredicted RBP20.86■□□□□ 0.93
CLN3-225ENST00000566824 ATP1A3P13637 1013 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 PRKCSHP14314 528 aaPredicted RBP20.86■□□□□ 0.93
CLN3-225ENST00000566824 SLC9A1P19634 815 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 CYP2F1P24903 491 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 EEF1GP26641 437 aaKnown RBP20.86■□□□□ 0.93
CLN3-225ENST00000566824 GPR15P49685 360 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 ZNF165P49910 485 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 ITIH3Q06033 890 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 INCA1Q0VD86 236 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 TWF1Q12792 350 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 SMAD2Q15796 467 aaKnown RBP20.86■□□□□ 0.93
CLN3-225ENST00000566824 UVSSAQ2YD98 709 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 VWA3BQ502W6 1294 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 CCDC149Q6ZUS6 474 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 CCDC150Q8NCX0 1101 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 STKLD1Q8NE28 680 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 MYLPFQ96A32 169 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 NDST4Q9H3R1 872 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 CYP3A43Q9HB55 503 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 CEP72Q9P209 647 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 DPP7Q9UHL4 492 aa20.86■□□□□ 0.93
CLN3-225ENST00000566824 CLDN5O00501 218 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 HNRNPA1P09651 372 aaKnown RBP eCLIP20.85■□□□□ 0.93
CLN3-225ENST00000566824 HAPLN1P10915 354 aaPredicted RBP20.85■□□□□ 0.93
CLN3-225ENST00000566824 CUL2Q13617 745 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 CBX2Q14781 532 aaPredicted RBP20.85■□□□□ 0.93
CLN3-225ENST00000566824 AAK1Q2M2I8 961 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 SDHAF4Q5VUM1 108 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 PHLDB3Q6NSJ2 640 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 CES5AQ6NT32 575 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 DPY19L2P1Q6NXN4 242 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 GJB7Q6PEY0 223 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 RRAGAQ7L523 313 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 APTXQ7Z2E3 356 aaKnown RBP20.85■□□□□ 0.93
CLN3-225ENST00000566824 GRASPQ7Z6J2 395 aaPredicted RBP20.85■□□□□ 0.93
CLN3-225ENST00000566824 UBR7Q8N806 425 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 B3GALNT2Q8NCR0 500 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 GPR152Q8TDT2 470 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 PCED1BQ96HM7 432 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 NECAB3Q96P71 396 aaPredicted RBP20.85■□□□□ 0.93
CLN3-225ENST00000566824 SEPT5Q99719 369 aaPredicted RBP20.85■□□□□ 0.93
CLN3-225ENST00000566824 B3GNT5Q9BYG0 378 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 VPS16Q9H269 839 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 CBX8Q9HC52 389 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 CISHQ9NSE2 258 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 TMEM30AQ9NV96 361 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 GCNT4Q9P109 453 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 PCDHB5Q9Y5E4 795 aa20.85■□□□□ 0.93
CLN3-225ENST00000566824 CILPO75339 1184 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 ATF6P18850 670 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 HOXA9P31269 272 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 CACNA2D1P54289 1103 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 ELMSAN1Q6PJG2 1045 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 PAQR9Q6ZVX9 377 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 HS6ST3Q8IZP7 471 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 C12orf29Q8N999 325 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 MYCBPAPQ8TBZ2 947 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 KREMEN1Q96MU8 473 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 NT5C1BQ96P26 610 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 NAT10Q9H0A0 1025 aaKnown RBP20.84■□□□□ 0.93
CLN3-225ENST00000566824 SIX2Q9NPC8 291 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 DNMT3BQ9UBC3 853 aaKnown RBP20.84■□□□□ 0.93
CLN3-225ENST00000566824 AJAP1Q9UKB5 411 aaPredicted RBP20.84■□□□□ 0.93
CLN3-225ENST00000566824 MAFFQ9ULX9 164 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 DOCK8Q8NF50 2099 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 GREB1Q4ZG55 1949 aa20.84■□□□□ 0.93
CLN3-225ENST00000566824 ACO1P21399 889 aaKnown RBP20.83■□□□□ 0.93
CLN3-225ENST00000566824 SP100P23497 879 aaPredicted RBP20.83■□□□□ 0.93
CLN3-225ENST00000566824 CYP27A1Q02318 531 aa20.83■□□□□ 0.93
CLN3-225ENST00000566824 KCNMA1Q12791 1236 aa20.83■□□□□ 0.93
CLN3-225ENST00000566824 NFE2Q16621 373 aaPredicted RBP20.83■□□□□ 0.93
CLN3-225ENST00000566824 PUS10Q3MIT2 529 aaKnown RBP20.83■□□□□ 0.93
CLN3-225ENST00000566824 MGAT5BQ3V5L5 792 aa20.83■□□□□ 0.93
CLN3-225ENST00000566824 ZNF394Q53GI3 561 aa20.83■□□□□ 0.93
CLN3-225ENST00000566824 ATAT1Q5SQI0 421 aa20.83■□□□□ 0.93
CLN3-225ENST00000566824 CRYBG2Q8N1P7 616 aa20.83■□□□□ 0.93
CLN3-225ENST00000566824 SPPL2BQ8TCT7 592 aa20.83■□□□□ 0.93
CLN3-225ENST00000566824 ZNF518BQ9C0D4 1074 aa20.83■□□□□ 0.93
CLN3-225ENST00000566824 PIDD1Q9HB75 910 aa20.83■□□□□ 0.93
CLN3-225ENST00000566824 LIMA1Q9UHB6 759 aaKnown RBP20.83■□□□□ 0.93
CLN3-225ENST00000566824 MYH10P35580 1976 aa20.83■□□□□ 0.92
CLN3-225ENST00000566824 A0A0C4DFX4 3053 aa20.83■□□□□ 0.92
CLN3-225ENST00000566824 CALCAP01258 141 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms