RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 YIPF1Q9Y548 306 aa15.31■□□□□ 0.04
USP3-205ENST00000557884 PCDHB5Q9Y5E4 795 aa15.31■□□□□ 0.04
USP3-205ENST00000557884 INSL5Q9Y5Q6 135 aa15.31■□□□□ 0.04
USP3-205ENST00000557884 TSC2P49815 1807 aa15.31■□□□□ 0.04
USP3-205ENST00000557884 PMM2O15305 246 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 P4HA2O15460 535 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 HNRNPA1P09651 372 aaKnown RBP eCLIP15.3■□□□□ 0.04
USP3-205ENST00000557884 FAM163BP0C2L3 166 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 BMP1P13497 986 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 PTPN1P18031 435 aaKnown RBP15.3■□□□□ 0.04
USP3-205ENST00000557884 SP100P23497 879 aaPredicted RBP15.3■□□□□ 0.04
USP3-205ENST00000557884 EEF1GP26641 437 aaKnown RBP15.3■□□□□ 0.04
USP3-205ENST00000557884 ZNF165P49910 485 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 PLXNA3P51805 1871 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 NTHL1P78549 312 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 CBX2Q14781 532 aaPredicted RBP15.3■□□□□ 0.04
USP3-205ENST00000557884 NCAPHQ15003 741 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 SMAD2Q15796 467 aaKnown RBP15.3■□□□□ 0.04
USP3-205ENST00000557884 NFE2Q16621 373 aaPredicted RBP15.3■□□□□ 0.04
USP3-205ENST00000557884 UVSSAQ2YD98 709 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 MGAT5BQ3V5L5 792 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 VWA3BQ502W6 1294 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 TJAP1Q5JTD0 557 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 ATAT1Q5SQI0 421 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 CDKAL1Q5VV42 579 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 SPATA2LQ8IUW3 424 aaPredicted RBP15.3■□□□□ 0.04
USP3-205ENST00000557884 B3GALNT2Q8NCR0 500 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 EHBP1Q8NDI1 1231 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 NT5C1BQ96P26 610 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 RHOBTB2Q9BYZ6 727 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 CYP3A43Q9HB55 503 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 GCNT4Q9P109 453 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 MAFFQ9ULX9 164 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 FAM50BQ9Y247 325 aa15.3■□□□□ 0.04
USP3-205ENST00000557884 XYLBO75191 536 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 CYP2F1P24903 491 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 HOXA9P31269 272 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 MTHFRP42898 656 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 CYP27A1Q02318 531 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 CUL2Q13617 745 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 KRT31Q15323 416 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 FAM171BQ6P995 826 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 GRASPQ7Z6J2 395 aaPredicted RBP15.29■□□□□ 0.04
USP3-205ENST00000557884 ACOT1Q86TX2 421 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 DHX40Q8IX18 779 aaKnown RBP15.29■□□□□ 0.04
USP3-205ENST00000557884 PPM1KQ8N3J5 372 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 LMO3Q8TAP4 145 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 MYCBPAPQ8TBZ2 947 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 SPPL2BQ8TCT7 592 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 KAT5Q92993 513 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 TWNKQ96RR1 684 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 VPS16Q9H269 839 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 NDST4Q9H3R1 872 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 POMKQ9H5K3 350 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 CISHQ9NSE2 258 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 HCFC1R1Q9NWW0 138 aa15.29■□□□□ 0.04
USP3-205ENST00000557884 HAPLN1P10915 354 aaPredicted RBP15.28■□□□□ 0.04
USP3-205ENST00000557884 ALDH1A3P47895 512 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 GPR15P49685 360 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 APBA1Q02410 837 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 INCA1Q0VD86 236 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 SMARCB1Q12824 385 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 ZNF394Q53GI3 561 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 MIIPQ5JXC2 388 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 SDHAF4Q5VUM1 108 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 GBP6Q6ZN66 633 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 C4orf50Q6ZRC1 276 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 RTL10Q7L3V2 364 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 RRAGAQ7L523 313 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 ARHGEF19Q8IW93 802 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 GPR152Q8TDT2 470 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 GIPC2Q8TF65 315 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 C2orf15Q8WU43 125 aaKnown RBP15.28■□□□□ 0.04
USP3-205ENST00000557884 PCED1BQ96HM7 432 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 TNIP3Q96KP6 325 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 NECTIN4Q96NY8 510 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 NECAB3Q96P71 396 aaPredicted RBP15.28■□□□□ 0.04
USP3-205ENST00000557884 BPIFA3Q9BQP9 254 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 ELOVL4Q9GZR5 314 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 HSD3B7Q9H2F3 369 aa15.28■□□□□ 0.04
USP3-205ENST00000557884 BECN2A8MW95 431 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 CLDN5O00501 218 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 CILPO75339 1184 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 ATP1A3P13637 1013 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 CCDC130P13994 396 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 SLC9A1P19634 815 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 CDK11BP21127 795 aaKnown RBP15.27■□□□□ 0.04
USP3-205ENST00000557884 BDNFP23560 247 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 TUFMP49411 452 aaKnown RBP15.27■□□□□ 0.04
USP3-205ENST00000557884 EPHB3P54753 998 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 PLD1Q13393 1074 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 MAPRE1Q15691 268 aaKnown RBP15.27■□□□□ 0.04
USP3-205ENST00000557884 EXOC3L4Q17RC7 722 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 UNC93AQ86WB7 457 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 SCN4BQ8IWT1 228 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 ELMOD1Q8N336 334 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 C12orf29Q8N999 325 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 STKLD1Q8NE28 680 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 FAM200AQ8TCP9 573 aa15.27■□□□□ 0.04
USP3-205ENST00000557884 WHAMMQ8TF30 809 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms