RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ZNF707Q96C28 371 aaPredicted RBP18.67■□□□□ 0.58
SHMT2-225ENST00000556798 INTS2Q9H0H0 1204 aaKnown RBP18.67■□□□□ 0.58
SHMT2-225ENST00000556798 ADAM7Q9H2U9 754 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 ZDHHC7Q9NXF8 308 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 YIPF1Q9Y548 306 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 GREB1Q4ZG55 1949 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 FAM163BP0C2L3 166 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 NDST1P52848 882 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 ITIH3Q06033 890 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 TWF1Q12792 350 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 CUL2Q13617 745 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 MDH1BQ5I0G3 518 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 GPR149Q86SP6 731 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 EHBP1Q8NDI1 1231 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 CMASQ8NFW8 434 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-225ENST00000556798 SMG7Q92540 1137 aaKnown RBP18.66■□□□□ 0.58
SHMT2-225ENST00000556798 NT5C1BQ96P26 610 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 ASB2Q96Q27 587 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 TWNKQ96RR1 684 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 SEPT5Q99719 369 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-225ENST00000556798 RHOBTB2Q9BYZ6 727 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 PRKD2Q9BZL6 878 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 NDST4Q9H3R1 872 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 CYP3A43Q9HB55 503 aa18.66■□□□□ 0.58
SHMT2-225ENST00000556798 LRG1P02750 347 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 ATP1A3P13637 1013 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 ZNF18P17022 549 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 CYP27A1Q02318 531 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 INCA1Q0VD86 236 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 NFE2Q16621 373 aaPredicted RBP18.65■□□□□ 0.58
SHMT2-225ENST00000556798 UVSSAQ2YD98 709 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 MGAT5BQ3V5L5 792 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 FAM171BQ6P995 826 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 ACOT1Q86TX2 421 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 ARHGEF19Q8IW93 802 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 PPM1KQ8N3J5 372 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 B3GALNT2Q8NCR0 500 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 SPPL2BQ8TCT7 592 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 SUSD6Q92537 303 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 KAT5Q92993 513 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 VPS16Q9H269 839 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 PIDD1Q9HB75 910 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 CBX8Q9HC52 389 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 PCDHB5Q9Y5E4 795 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 OBSL1O75147 1896 aa18.65■□□□□ 0.58
SHMT2-225ENST00000556798 DOCK8Q8NF50 2099 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 CILPO75339 1184 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 HNRNPA1P09651 372 aaKnown RBP eCLIP18.64■□□□□ 0.57
SHMT2-225ENST00000556798 PTPN1P18031 435 aaKnown RBP18.64■□□□□ 0.57
SHMT2-225ENST00000556798 SLC9A1P19634 815 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 CYP2F1P24903 491 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 HOXA9P31269 272 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 APBA1Q02410 837 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 CBX2Q14781 532 aaPredicted RBP18.64■□□□□ 0.57
SHMT2-225ENST00000556798 IQCB1Q15051 598 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 SMAD2Q15796 467 aaKnown RBP18.64■□□□□ 0.57
SHMT2-225ENST00000556798 GBP6Q6ZN66 633 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 RRAGAQ7L523 313 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 SPATA2LQ8IUW3 424 aaPredicted RBP18.64■□□□□ 0.57
SHMT2-225ENST00000556798 MYCBPAPQ8TBZ2 947 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 WHAMMQ8TF30 809 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 C2orf15Q8WU43 125 aaKnown RBP18.64■□□□□ 0.57
SHMT2-225ENST00000556798 PCED1BQ96HM7 432 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 CISHQ9NSE2 258 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 HCFC1R1Q9NWW0 138 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 MAFFQ9ULX9 164 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 PATJQ8NI35 1801 aa18.64■□□□□ 0.57
SHMT2-225ENST00000556798 ZNF638Q14966 1978 aaKnown RBP18.64■□□□□ 0.57
SHMT2-225ENST00000556798 DENND4CQ5VZ89 1909 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 SMTNL1A8MU46 457 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 BECN2A8MW95 431 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 HAPLN1P10915 354 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-225ENST00000556798 CDK11BP21127 795 aaKnown RBP18.63■□□□□ 0.57
SHMT2-225ENST00000556798 GPR15P49685 360 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 COPB1P53618 953 aaKnown RBP18.63■□□□□ 0.57
SHMT2-225ENST00000556798 NTHL1P78549 312 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 SMARCB1Q12824 385 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 EXOC3L4Q17RC7 722 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 PUS10Q3MIT2 529 aaKnown RBP18.63■□□□□ 0.57
SHMT2-225ENST00000556798 ZNF394Q53GI3 561 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 ATAT1Q5SQI0 421 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 GJB7Q6PEY0 223 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 TRIM65Q6PJ69 517 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 LUZP1Q86V48 1076 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 UNC93AQ86WB7 457 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 FAXDC2Q96IV6 333 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 RIPOR3Q96MK2 946 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 ELOVL4Q9GZR5 314 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 POMKQ9H5K3 350 aa18.63■□□□□ 0.57
SHMT2-225ENST00000556798 LIMA1Q9UHB6 759 aaKnown RBP18.63■□□□□ 0.57
SHMT2-225ENST00000556798 GTPBP10A4D1E9 387 aaKnown RBP18.62■□□□□ 0.57
SHMT2-225ENST00000556798 XYLBO75191 536 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 PAPLNO95428 1278 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 BMP1P13497 986 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 CCDC130P13994 396 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 ATF6P18850 670 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 SP100P23497 879 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-225ENST00000556798 TBXAS1P24557 533 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-225ENST00000556798 PON1P27169 355 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 MTHFRP42898 656 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms