RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CNTN6Q9UQ52 1028 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 ACOT2P49753 483 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 WNT7BP56706 349 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 SESN3P58005 492 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 RTP1P59025 263 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 RPS6P62753 249 aaKnown RBP18.44■□□□□ 0.54
SYNE3-202ENST00000553340 MXRA7P84157 204 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 ZNF252P-AS1Q0IIN9 211 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 DCUN1D2Q6PH85 259 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 BANPQ8N9N5 519 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 NSL1Q96IY1 281 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 ZNF333Q96JL9 665 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 MCEEQ96PE7 176 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 DHRS4Q9BTZ2 278 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 NMRK1Q9NWW6 199 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 ZNF219Q9P2Y4 722 aaPredicted RBP18.44■□□□□ 0.54
SYNE3-202ENST00000553340 GABBR1Q9UBS5 961 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 GYG2O15488 501 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 DGAT1O75907 488 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 CALB1P05937 261 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 ABCD1P33897 745 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 CDKN2BP42772 138 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 ARFIP2P53365 341 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 NLRP11P59045 1033 aaKnown RBP18.44■□□□□ 0.54
SYNE3-202ENST00000553340 DNAJC24Q6P3W2 148 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 DSTYKQ6XUX3 929 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 ZNF606Q8WXB4 792 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 PTCD3Q96EY7 689 aaKnown RBP18.44■□□□□ 0.54
SYNE3-202ENST00000553340 TSSK1BQ9BXA7 367 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 ARL8BQ9NVJ2 186 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 ARHGAP28Q9P2N2 729 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 AGO2Q9UKV8 859 aaKnown RBP18.44■□□□□ 0.54
SYNE3-202ENST00000553340 SNCAIPQ9Y6H5 919 aa18.44■□□□□ 0.54
SYNE3-202ENST00000553340 PTPRJQ12913 1337 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 GOLGA8RI6L899 631 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 GSC2O15499 205 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 UPP2O95045 317 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 NEFHP12036 1026 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 RHPN2Q8IUC4 686 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 SLC35B2Q8TB61 432 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 MZB1Q8WU39 189 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 ATP6V0A1Q93050 837 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 MCUR1Q96AQ8 359 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 ACSF2Q96CM8 615 aaPredicted RBP18.43■□□□□ 0.54
SYNE3-202ENST00000553340 GJD4Q96KN9 370 aaPredicted RBP18.43■□□□□ 0.54
SYNE3-202ENST00000553340 RMDN3Q96TC7 470 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 SH3GL3Q99963 347 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 SLC17A7Q9P2U7 560 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 SPDYE2BA6NHP3 402 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 NPTXRO95502 500 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 FESP07332 822 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 SPDYE6P0CI01 402 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 ZBTB16Q05516 673 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 PIGHQ14442 188 aaPredicted RBP18.43■□□□□ 0.54
SYNE3-202ENST00000553340 RCN1Q15293 331 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 C11orf91Q3C1V1 193 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 FNBP1LQ5T0N5 605 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 TXNRD3NBQ6F5E7 133 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 TMEM154Q6P9G4 183 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 PALM2Q8IXS6 379 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 SPDYE1Q8NFV5 336 aaPredicted RBP18.43■□□□□ 0.54
SYNE3-202ENST00000553340 PDCD2LQ9BRP1 358 aa18.43■□□□□ 0.54
SYNE3-202ENST00000553340 RAVER2Q9HCJ3 691 aaKnown RBP18.43■□□□□ 0.54
SYNE3-202ENST00000553340 MTO1Q9Y2Z2 717 aaKnown RBP18.43■□□□□ 0.54
SYNE3-202ENST00000553340 AHCYL1O43865 530 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 ZNF862O60290 1169 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 DKC1O60832 514 aaKnown RBP eCLIP18.42■□□□□ 0.54
SYNE3-202ENST00000553340 DNAJC6O75061 913 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 GAD2Q05329 585 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 SNX30Q5VWJ9 437 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 IRGCQ6NXR0 463 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 VPS52Q8N1B4 723 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 FBXO36Q8NEA4 188 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 CPT1BQ92523 772 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 SYT15Q9BQS2 421 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 VCXQ9H320 206 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 ZNF70Q9UC06 446 aaPredicted RBP18.42■□□□□ 0.54
SYNE3-202ENST00000553340 LRCH1Q9Y2L9 728 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 EME2A4GXA9 379 aaPredicted RBP18.42■□□□□ 0.54
SYNE3-202ENST00000553340 PIAS1O75925 651 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 ZRSR2Q15696 482 aaKnown RBP18.42■□□□□ 0.54
SYNE3-202ENST00000553340 MSS51Q4VC12 460 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 ANKRD22Q5VYY1 191 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 DCAKDQ8WVC6 231 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 PTPRN2Q92932 1015 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 TSC22D3Q99576 134 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 KLF6Q99612 283 aaPredicted RBP18.42■□□□□ 0.54
SYNE3-202ENST00000553340 C12orf65Q9H3J6 166 aaKnown RBP18.42■□□□□ 0.54
SYNE3-202ENST00000553340 XPNPEP1Q9NQW7 623 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 RBAKQ9NYW8 714 aaPredicted RBP18.42■□□□□ 0.54
SYNE3-202ENST00000553340 NUB1Q9Y5A7 615 aa18.42■□□□□ 0.54
SYNE3-202ENST00000553340 SMIM24O75264 130 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 SKIP12755 728 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 SERPINB3P29508 390 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 CDK16Q00536 496 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 OGDHQ02218 1023 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 TAP1Q03518 808 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 CCDC62Q6P9F0 684 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 LRRC6Q86X45 466 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 NAT8LQ8N9F0 302 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms