RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 M0QZQ0 153 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 AKAP3O75969 853 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 OAZ2O95190 189 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 PROZP22891 400 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 NPTX2P47972 431 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 SPAG1Q07617 926 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 SLC10A6Q3KNW5 377 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 ITPRIPL2Q3MIP1 535 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 ARHGAP15Q53QZ3 475 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 CENPPQ6IPU0 288 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 MPZL3Q6UWV2 235 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 DNAJB7Q7Z6W7 309 aaPredicted RBP11.42□□□□□ -0.58
VPS29-208ENST00000550267 ATAD1Q8NBU5 361 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 ERMNQ8TAM6 284 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 ZBTB45Q96K62 511 aaPredicted RBP11.42□□□□□ -0.58
VPS29-208ENST00000550267 HHIPQ96QV1 700 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 SMG9Q9H0W8 520 aaKnown RBP11.42□□□□□ -0.58
VPS29-208ENST00000550267 DUSP15Q9H1R2 295 aaPredicted RBP11.42□□□□□ -0.58
VPS29-208ENST00000550267 WASF3Q9UPY6 502 aa11.42□□□□□ -0.58
VPS29-208ENST00000550267 MTMR11A4FU01 709 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 DCLK1O15075 740 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 ATG13O75143 517 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 EGFP01133 1207 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 MCM2P49736 904 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 CREB5Q02930 508 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 KCNMA1Q12791 1236 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 GRSF1Q12849 480 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS29-208ENST00000550267 GPR17Q13304 367 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 TMEM196Q5HYL7 178 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 DAW1Q8N136 415 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 NECAB1Q8N987 351 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 PSMG2Q969U7 264 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 CHFRQ96EP1 664 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 GKN1Q9NS71 199 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 ARHGAP28Q9P2N2 729 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 ASB3Q9Y575 518 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 F5P12259 2224 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 FRYQ5TBA9 3013 aa11.41□□□□□ -0.58
VPS29-208ENST00000550267 TRIP11Q15643 1979 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 OTOL1A6NHN0 477 aaPredicted RBP11.4□□□□□ -0.58
VPS29-208ENST00000550267 OR6C75A6NL08 312 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 EPB41L2O43491 1005 aaKnown RBP11.4□□□□□ -0.58
VPS29-208ENST00000550267 FGF19O95750 216 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 CAVIN2O95810 425 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 OR52Z1P0C646 297 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 CCT6AP40227 531 aaKnown RBP11.4□□□□□ -0.58
VPS29-208ENST00000550267 CDR1P51861 262 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 RUNX3Q13761 415 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 PTPAQ15257 358 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 ZNF174Q15697 407 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 ELF2Q15723 593 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 SH3PXD2AQ5TCZ1 1133 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 TRIM68Q6AZZ1 485 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 DSTYKQ6XUX3 929 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 USP37Q86T82 979 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 CCDC116Q8IYX3 515 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 CAMKK1Q8N5S9 505 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 LPIN3Q9BQK8 851 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 OXCT2Q9BYC2 517 aaPredicted RBP11.4□□□□□ -0.58
VPS29-208ENST00000550267 TASP1Q9H6P5 420 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 FBRSL1Q9HCM7 1045 aaKnown RBP11.4□□□□□ -0.58
VPS29-208ENST00000550267 HPS4Q9NQG7 708 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 KMT5AQ9NQR1 393 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 THG1LQ9NWX6 298 aaKnown RBP11.4□□□□□ -0.58
VPS29-208ENST00000550267 ANKFY1Q9P2R3 1169 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 KIAA1024Q9UPX6 916 aa11.4□□□□□ -0.58
VPS29-208ENST00000550267 NUP210Q8TEM1 1887 aaPredicted RBP11.4□□□□□ -0.59
VPS29-208ENST00000550267 LOC100996750A0A140TA64 210 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 LNP1A1A4G5 178 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 BCLAF3A2AJT9 711 aaKnown RBP11.39□□□□□ -0.59
VPS29-208ENST00000550267 SRRM3A6NNA2 597 aaPredicted RBP11.39□□□□□ -0.59
VPS29-208ENST00000550267 TRDMT1O14717 391 aaKnown RBP11.39□□□□□ -0.59
VPS29-208ENST00000550267 JAK2O60674 1132 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 HIP1RO75146 1068 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 RHOBTB1O94844 696 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 LARGE1O95461 756 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 CXCL8P10145 99 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 MUTP22033 750 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 U2AF2P26368 475 aaKnown RBP eCLIP11.39□□□□□ -0.592e-6■■□□□ 11.9
VPS29-208ENST00000550267 WEE1P30291 646 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 LRPAP1P30533 357 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 AARSP49588 968 aaKnown RBP eCLIP11.39□□□□□ -0.59
VPS29-208ENST00000550267 GUCY2FP51841 1108 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 DMP1Q13316 513 aaPredicted RBP11.39□□□□□ -0.59
VPS29-208ENST00000550267 TRIM29Q14134 588 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 NOLC1Q14978 699 aaKnown RBP eCLIP11.39□□□□□ -0.59
VPS29-208ENST00000550267 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.39□□□□□ -0.59
VPS29-208ENST00000550267 DAB2IPQ5VWQ8 1189 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 HAUS3Q68CZ6 603 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 NAIF1Q69YI7 327 aaPredicted RBP11.39□□□□□ -0.59
VPS29-208ENST00000550267 OVOS1Q6IE37 1185 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 ITIH5Q86UX2 942 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 NSUN7Q8NE18 718 aaKnown RBP11.39□□□□□ -0.59
VPS29-208ENST00000550267 GATA6Q92908 595 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 SEPT5Q99719 369 aaPredicted RBP11.39□□□□□ -0.59
VPS29-208ENST00000550267 FAM83CQ9BQN1 747 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 SCNM1Q9BWG6 230 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 SLC46A2Q9BY10 475 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 KRTAP4-6Q9BYQ5 205 aa11.39□□□□□ -0.59
VPS29-208ENST00000550267 EBF3Q9H4W6 596 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms