RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 WDR49Q8IV35 697 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 OR6P1Q8NGX9 317 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 SLC7A14Q8TBB6 771 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 CHST7Q9NS84 486 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 USP15Q9Y4E8 981 aaPredicted RBP17.04■□□□□ 0.32
CUX1-213ENST00000549414 OPHN1O60890 802 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 NOL4O94818 638 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 EPHB1P54762 984 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 GTF2BQ00403 316 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 GCNT1Q02742 428 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 DEUP1Q05D60 604 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 PTPN11Q06124 597 aaPredicted RBP17.04■□□□□ 0.32
CUX1-213ENST00000549414 PTK7Q13308 1070 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 ATP6V1E2Q96A05 226 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 PLEKHA5Q9HAU0 1116 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 PCMTD2Q9NV79 361 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 COL20A1Q9P218 1284 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 KCNH4Q9UQ05 1017 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 ARL2BPQ9Y2Y0 163 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 GJB1P08034 283 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 ZFXP17010 805 aaPredicted RBP17.04■□□□□ 0.32
CUX1-213ENST00000549414 GLRA2P23416 452 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 GCLCP48506 637 aaPredicted RBP17.04■□□□□ 0.32
CUX1-213ENST00000549414 ZNF200P98182 395 aaPredicted RBP17.04■□□□□ 0.32
CUX1-213ENST00000549414 TFDP3Q5H9I0 405 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 HGSNATQ68CP4 663 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 C10orf88Q9H8K7 445 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.04■□□□□ 0.328e-7■■■□□ 15.9
CUX1-213ENST00000549414 CASP2P42575 452 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 LLGL2Q6P1M3 1020 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 TMC3Q7Z5M5 1100 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 PPP1R36Q96LQ0 422 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 CHUKO15111 745 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 CCNE2O96020 404 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 LVRNQ6Q4G3 990 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 MFSD7Q6UXD7 560 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 SPOCD1Q6ZMY3 1216 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 RASSF3Q86WH2 238 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.03■□□□□ 0.32
CUX1-213ENST00000549414 ERP27Q96DN0 273 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 ROPN1BQ9BZX4 212 aaPredicted RBP17.03■□□□□ 0.32
CUX1-213ENST00000549414 MROH8Q9H579 483 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 ROPN1Q9HAT0 212 aaPredicted RBP17.03■□□□□ 0.32
CUX1-213ENST00000549414 SENP1Q9P0U3 644 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 APOBEC2Q9Y235 224 aaKnown RBP17.03■□□□□ 0.32
CUX1-213ENST00000549414 NPM3O75607 178 aaKnown RBP17.03■□□□□ 0.32
CUX1-213ENST00000549414 NUF2Q9BZD4 464 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 PDGFDQ9GZP0 370 aaPredicted RBP17.03■□□□□ 0.32
CUX1-213ENST00000549414 CYP4F11Q9HBI6 524 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 SYNPO2Q9UMS6 1093 aa17.03■□□□□ 0.32
CUX1-213ENST00000549414 CPB1P15086 417 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 CLK2P49760 499 aaKnown RBP17.02■□□□□ 0.32
CUX1-213ENST00000549414 COPS2P61201 443 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 CATSPERGQ6ZRH7 1159 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 FAM131BQ86XD5 332 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 RXFP2Q8WXD0 754 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 VPS39Q96JC1 886 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 KLC4Q9NSK0 619 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 ARFGEF2Q9Y6D5 1785 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 PPP1R12AO14974 1030 aaPredicted RBP17.02■□□□□ 0.32
CUX1-213ENST00000549414 HMBSP08397 361 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 TGFB3P10600 412 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 GRIK1P39086 918 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 ZNF844Q08AG5 666 aa17.02■□□□□ 0.32
CUX1-213ENST00000549414 CD4P01730 458 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 ATP13A4Q4VNC1 1196 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 COBLL1Q53SF7 1204 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 MAP3K21Q5TCX8 1036 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 MROH9Q5TGP6 573 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 PPIL6Q8IXY8 311 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 OR5B17Q8NGF7 314 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 F8VP50 259 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 KRT4P19013 534 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 IFI35P80217 286 aaPredicted RBP17.02■□□□□ 0.31
CUX1-213ENST00000549414 OVGP1Q12889 678 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 JADE1Q6IE81 842 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 FAM172AQ8WUF8 416 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 CDCA5Q96FF9 252 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 EPAS1Q99814 870 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 UBN1Q9NPG3 1134 aa17.02■□□□□ 0.31
CUX1-213ENST00000549414 M0R2N6 131 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 ACO1P21399 889 aaKnown RBP17.01■□□□□ 0.31
CUX1-213ENST00000549414 OAZ1P54368 228 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 DBN1Q16643 649 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 ZNF484Q5JVG2 852 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 TRPM8Q7Z2W7 1104 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 PALB2Q86YC2 1186 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 REPS2Q8NFH8 660 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 EXD1Q8NHP7 514 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 PPWD1Q96BP3 646 aaKnown RBP17.01■□□□□ 0.31
CUX1-213ENST00000549414 PORCNQ9H237 461 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 GDF3Q9NR23 364 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 SNTG2Q9NY99 539 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 GTSE1Q9NYZ3 720 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 PAK5Q9P286 719 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 SMG5Q9UPR3 1016 aaKnown RBP17.01■□□□□ 0.31
CUX1-213ENST00000549414 PCDHA3Q9Y5H8 950 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 NCAM1P13591 858 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 AKAP5P24588 427 aa17.01■□□□□ 0.31
CUX1-213ENST00000549414 TNFSF9P41273 254 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms