RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 ADAM28Q9UKQ2 775 aa4.56□□□□□ -1.68
SNHG1-220ENST00000544550 EFR3BQ9Y2G0 817 aa4.56□□□□□ -1.68
SNHG1-220ENST00000544550 MRPS23Q9Y3D9 190 aaKnown RBP4.56□□□□□ -1.68
SNHG1-220ENST00000544550 PCDHB2Q9Y5E7 798 aa4.56□□□□□ -1.68
SNHG1-220ENST00000544550 PCDHA10Q9Y5I2 948 aa4.56□□□□□ -1.68
SNHG1-220ENST00000544550 FAM208BQ5VWN6 2430 aa4.56□□□□□ -1.68
SNHG1-220ENST00000544550 CEP250Q9BV73 2442 aa4.56□□□□□ -1.68
SNHG1-220ENST00000544550 SF3B1O75533 1304 aaKnown RBP eCLIP4.55□□□□□ -1.682e-7■■■■□ 22.6
SNHG1-220ENST00000544550 FAM221BA6H8Z2 402 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 MEIS3P2A8K0S8 358 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 WDR64B1ANS9 1081 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 IPO5O00410 1097 aaKnown RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 GFRA2O00451 464 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 MEIS1O00470 390 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 ZNF197O14709 1029 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 IFIT3O14879 490 aaKnown RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 ZNF263O14978 683 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 CCL16O15467 120 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 B4GALT3O60512 393 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 ATG13O75143 517 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 TADA2AO75478 443 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 CAVIN2O95810 425 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 ITGA4P13612 1032 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 LIG1P18858 919 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 NCLP19338 710 aaKnown RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 CCNE1P24864 410 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 NASPP49321 788 aaPredicted RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 NTHL1P78549 312 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 SETQ01105 290 aaPredicted RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 DSC1Q08554 894 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 NMIQ13287 307 aaPredicted RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 HNRNPDQ14103 355 aaKnown RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 PCBP1Q15365 356 aaKnown RBP eCLIP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 UBE2SQ16763 222 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 SLC35G1Q2M3R5 365 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 COL28A1Q2UY09 1125 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 SEZ6Q53EL9 994 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 EXOSC6Q5RKV6 272 aaKnown RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 HP1BP3Q5SSJ5 553 aaPredicted RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 DIEXFQ68CQ4 756 aaKnown RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 KIAA1211LQ6NV74 962 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 C19orf48Q6RUI8 117 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 REC114Q7Z4M0 266 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 KBTBD6Q86V97 674 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 C11orf74Q86VG3 221 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 REXO1Q8N1G1 1221 aaKnown RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 CAMKK1Q8N5S9 505 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 SLC7A14Q8TBB6 771 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 PIBF1Q8WXW3 757 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 E2F7Q96AV8 911 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 MCRS1Q96EZ8 462 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 WDR89Q96FK6 387 aaPredicted RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 UBL7Q96S82 380 aaPredicted RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 JPH2Q9BR39 696 aaPredicted RBP4.55□□□□□ -1.68
SNHG1-220ENST00000544550 PLA2G2FQ9BZM2 168 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 GLT8D2Q9H1C3 349 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 AGPAT5Q9NUQ2 364 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 GABBR1Q9UBS5 961 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 STRIP2Q9ULQ0 834 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 PCDHA4Q9UN74 947 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 ASPMQ8IZT6 3477 aa4.55□□□□□ -1.68
SNHG1-220ENST00000544550 MYO10Q9HD67 2058 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 A0A087WZ62 844 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 LNP1A1A4G5 178 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 MEGF11A6BM72 1044 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 CAPN8A6NHC0 703 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 HIP1O00291 1037 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 HYAL3O43820 417 aaPredicted RBP4.54□□□□□ -1.68
SNHG1-220ENST00000544550 CSDE1O75534 798 aaKnown RBP4.54□□□□□ -1.68
SNHG1-220ENST00000544550 DDAH1O94760 285 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 WISP1O95388 367 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 BPNT1O95861 308 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 TOP3BO95985 862 aaKnown RBP4.54□□□□□ -1.68
SNHG1-220ENST00000544550 RHOP08100 348 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 PTPN2P17706 415 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 ITGB7P26010 798 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 COL8A1P27658 744 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 AXLP30530 894 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 GDI1P31150 447 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 SFNP31947 248 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 MLH1P40692 756 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 KPNA1P52294 538 aaPredicted RBP4.54□□□□□ -1.68
SNHG1-220ENST00000544550 HNRNPUQ00839 825 aaKnown RBP eCLIP4.54□□□□□ -1.68
SNHG1-220ENST00000544550 PRKCEQ02156 737 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 CREB5Q02930 508 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 SPIRE1Q08AE8 756 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 NCBP1Q09161 790 aaKnown RBP4.54□□□□□ -1.68
SNHG1-220ENST00000544550 LMAN2Q12907 356 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 ELAVL2Q12926 359 aaKnown RBP4.54□□□□□ -1.68
SNHG1-220ENST00000544550 GRIK3Q13003 919 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 INPP5AQ14642 412 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 PSMD5Q16401 504 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 DUOXA2Q1HG44 320 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 TANGO2Q6ICL3 276 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 LRFN4Q6PJG9 635 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 IGF2-ASQ6U949 168 aa4.54□□□□□ -1.68
SNHG1-220ENST00000544550 TRMT1LQ7Z2T5 733 aaKnown RBP4.54□□□□□ -1.68
SNHG1-220ENST00000544550 RALYLQ86SE5 291 aaKnown RBP4.54□□□□□ -1.68
SNHG1-220ENST00000544550 RALGPS2Q86X27 583 aaPredicted RBP4.54□□□□□ -1.68
SNHG1-220ENST00000544550 PLA2G4DQ86XP0 818 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms