RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 PCIF1Q9H4Z3 704 aa14.22□□□□□ -0.13
CLSTN3-205ENST00000535452 TDP1Q9NUW8 608 aa14.22□□□□□ -0.13
CLSTN3-205ENST00000535452 FAM13BQ9NYF5 915 aa14.22□□□□□ -0.13
CLSTN3-205ENST00000535452 GTSE1Q9NYZ3 720 aa14.22□□□□□ -0.13
CLSTN3-205ENST00000535452 DOCK6Q96HP0 2047 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 GOLGA8IPA6NC78 632 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 GOLGA8JA6NMD2 632 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 TISP43B9A030 160 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 SPTLC2O15270 562 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 LILRB5O75023 590 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 LRP3O75074 770 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 USP17L7P0C7H9 530 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 CHRNB1P11230 501 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 ATF6P18850 670 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 TNNI1P19237 187 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 IFNAR2P48551 515 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 TNNC1P63316 161 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 RESTQ13127 1097 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 TRPC3Q13507 836 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 RUNX3Q13761 415 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 INTS6LQ5JSJ4 861 aaKnown RBP14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 HSCBQ8IWL3 235 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 EFCAB13Q8IY85 973 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 PDCL2Q8N4E4 241 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 TTC9BQ8N6N2 239 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 FUBP3Q96I24 572 aaKnown RBP eCLIP14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 ZFYVE19Q96K21 471 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 FIZ1Q96SL8 496 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 LRRC3Q9BY71 257 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 DNAI2Q9GZS0 605 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 SNX25Q9H3E2 840 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 MAGEF1Q9HAY2 307 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 FOXD4L1Q9NU39 408 aa14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 MAGEC2Q9UBF1 373 aaPredicted RBP14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 RIF1Q5UIP0 2472 aaKnown RBP14.21□□□□□ -0.13
CLSTN3-205ENST00000535452 PPP1R37O75864 691 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 RETP07949 1114 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 CCDC192P0DO97 292 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 GRIK1P39086 918 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 SOX9P48436 509 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 NLRP12P59046 1061 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 SATB1Q01826 763 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 LPAL2Q16609 132 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 FBXO43Q4G163 708 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 HEATR6Q6AI08 1181 aaKnown RBP14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 USP49Q70CQ1 688 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 HPDLQ96IR7 371 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 USP28Q96RU2 1077 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 RTKNQ9BST9 563 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 MTMR12Q9C0I1 747 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 GKN1Q9NS71 199 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 GDAP2Q9NXN4 497 aa14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 MORC2Q9Y6X9 1032 aaPredicted RBP14.2□□□□□ -0.14
CLSTN3-205ENST00000535452 TRIM66O15016 1216 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 EIF3DO15371 548 aaKnown RBP eCLIP14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 PHACTR2O75167 634 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 PPP6R2O75170 966 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 VNN2O95498 520 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 DRD1P21728 446 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 ACAT1P24752 427 aaKnown RBP14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 ADSSP30520 456 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 SNRPFP62306 86 aaKnown RBP14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 CYP27A1Q02318 531 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 FAM160A1Q05DH4 1040 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 PSMD2Q13200 908 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 FAM173BQ6P4H8 233 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 VSTM1Q6UX27 236 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 CRELD2Q6UXH1 353 aaPredicted RBP14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 MON1AQ86VX9 555 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 WDR49Q8IV35 697 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 CEP57L1Q8IYX8 460 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 TMEM130Q8N3G9 435 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 C1orf127Q8N9H9 656 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 C12orf50Q8NA57 414 aaPredicted RBP14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 GOLGA5Q8TBA6 731 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 LRRC15Q8TF66 581 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 NELL1Q92832 810 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 ATP2A3Q93084 1043 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 DHX58Q96C10 678 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 DNAJC19Q96DA6 116 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 CEP295NLQ96MC4 621 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 CBWD1Q9BRT8 395 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 SLC46A2Q9BY10 475 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 PDE11AQ9HCR9 933 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 GTF3C4Q9UKN8 822 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 CDH9Q9ULB4 789 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 NOTCH4Q99466 2003 aa14.19□□□□□ -0.14
CLSTN3-205ENST00000535452 ATP8B3O60423 1300 aa14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 UBE4BO95155 1302 aa14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 CHURC1-FNTBB4DL54 471 aa14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 ARNTLO00327 626 aa14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 CUTAO60888 179 aa14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 PAPSS2O95340 614 aaPredicted RBP14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 PRAMEF12O95522 483 aa14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 DLATP10515 647 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 PPP3CCP48454 512 aa14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 NASPP49321 788 aaPredicted RBP14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 FNTBP49356 437 aa14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 CDR1P51861 262 aa14.18□□□□□ -0.14
CLSTN3-205ENST00000535452 KCNA1Q09470 495 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms