RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 CMTR2Q8IYT2 770 aaKnown RBP3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 IFNL3Q8IZI9 196 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 LGI4Q8N135 537 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 SLC44A3Q8N4M1 653 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 NETO2Q8NC67 525 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 ADCY4Q8NFM4 1077 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 DNERQ8NFT8 737 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 IL31RAQ8NI17 732 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 ADAMTS17Q8TE56 1095 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 NSUN6Q8TEA1 469 aaKnown RBP3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 DNAJB3Q8WWF6 145 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 APBB2Q92870 758 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 TSPAN17Q96FV3 270 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 TCF25Q9BQ70 676 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 TMEM47Q9BQJ4 181 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 RTP3Q9BQQ7 232 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 SEMA4AQ9H3S1 761 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 CWH43Q9H720 699 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 TBC1D17Q9HA65 648 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 MLXIPQ9HAP2 919 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 VAT1LQ9HCJ6 419 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 CYP26B1Q9NR63 512 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 SPATA6Q9NWH7 488 aaPredicted RBP3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 NCDNQ9UBB6 729 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 ARPP21Q9UBL0 812 aaPredicted RBP3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 USP18Q9UMW8 372 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 NR2E1Q9Y466 385 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 MRVI1Q9Y6F6 885 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 CDY2AQ9Y6F7 541 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 MYO5AQ9Y4I1 1855 aaKnown RBP3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 SCN10AQ9Y5Y9 1956 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 MYO10Q9HD67 2058 aa3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 CNOT1A5YKK6 2376 aaKnown RBP3.45□□□□□ -1.86
CHMP4A-208ENST00000534106 HELZ2Q9BYK8 2649 aaKnown RBP3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 GPAA1O43292 621 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 RANBP6O60518 1105 aaKnown RBP3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 CXCL14O95715 111 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 ZNF20P17024 532 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 CD72P21854 359 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 UBA1P22314 1058 aaKnown RBP3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 MARK3P27448 753 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 HOXA13P31271 388 aaPredicted RBP3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 CA8P35219 290 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 GDF5P43026 501 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 IGBP1P78318 339 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 PPARAQ07869 468 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 MARCH8Q5T0T0 291 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 EEF1DP3Q658K8 133 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 CES5AQ6NT32 575 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 CEP85Q6P2H3 762 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 TMED8Q6PL24 325 aaPredicted RBP3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 LRSAM1Q6UWE0 723 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 UNC5AQ6ZN44 842 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 MRPL43Q8N983 215 aaKnown RBP3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 TDRD5Q8NAT2 981 aaKnown RBP3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 COLGALT1Q8NBJ5 622 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 LMBR1Q8WVP7 490 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 TRAPPC12Q8WVT3 735 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 ARHGAP45Q92619 1136 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 RBM15Q96T37 977 aaKnown RBP eCLIP3.44□□□□□ -1.862e-9■■□□□ 12.9
CHMP4A-208ENST00000534106 TM9SF2Q99805 663 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 RTKNQ9BST9 563 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 RPP25Q9BUL9 199 aaKnown RBP3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 KATNAL1Q9BW62 490 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 FAM49AQ9H0Q0 323 aaPredicted RBP3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 GBP3Q9H0R5 595 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 ENTPD7Q9NQZ7 604 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 GULP1Q9UBP9 304 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 PADI3Q9ULW8 664 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 INVSQ9Y283 1065 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 SIT1Q9Y3P8 196 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 PCDHB7Q9Y5E2 793 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 SIP14410 1827 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 NAV2Q8IVL1 2488 aa3.44□□□□□ -1.86
CHMP4A-208ENST00000534106 LOC102724159A0A0B4J2E5 919 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 MROH6A6NGR9 719 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 TSPY2A6NKD2 308 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 PRR5-ARHGAP8B1AHC4 643 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 FOXP2O15409 715 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 RNF113AO15541 343 aaKnown RBP3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 NPHS1O60500 1241 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 KINO60870 393 aaKnown RBP3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 CFBP00751 764 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 FUCA1P04066 466 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 PROS1P07225 676 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 SPATA31D3P0C874 917 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 SCG2P13521 617 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 HOXB8P17481 243 aaPredicted RBP3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 ATP5JP18859 108 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 PAMP19021 973 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 GUCY2CP25092 1073 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 MTHFRP42898 656 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 ARHGAP8P85298 464 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 ITIH3Q06033 890 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 SRSF5Q13243 272 aaKnown RBP3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 PWP2Q15269 919 aaKnown RBP3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 CCDC6Q16204 474 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 GNPTABQ3T906 1256 aa3.43□□□□□ -1.86
CHMP4A-208ENST00000534106 RRP12Q5JTH9 1297 aaKnown RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms