RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 CCNYL1Q8N7R7 359 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 PPM1NQ8N819 430 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 OR9Q1Q8NGQ5 310 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 TMC2Q8TDI7 906 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 OSMRQ99650 979 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 CCDC3Q9BQI4 270 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 UBE2OQ9C0C9 1292 aaKnown RBP4.44□□□□□ -1.7
VCAN-209ENST00000513016 ZNF518BQ9C0D4 1074 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 TAF1DQ9H5J8 278 aaPredicted RBP4.44□□□□□ -1.7
VCAN-209ENST00000513016 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.44□□□□□ -1.7
VCAN-209ENST00000513016 SPG21Q9NZD8 308 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 MAD2L2Q9UI95 211 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 AAR2Q9Y312 384 aaKnown RBP4.44□□□□□ -1.7
VCAN-209ENST00000513016 FHOD1Q9Y613 1164 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 NFASCO94856 1347 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 FAM47DPA6NHR8 397 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 IGF2BP3O00425 579 aaKnown RBP eCLIP4.44□□□□□ -1.7
VCAN-209ENST00000513016 PRKAR2AP13861 404 aaKnown RBP4.44□□□□□ -1.7
VCAN-209ENST00000513016 ALOX15P16050 662 aaPredicted RBP4.44□□□□□ -1.7
VCAN-209ENST00000513016 GNGT1P63211 74 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 TMPRSS15P98073 1019 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 RAB30Q15771 203 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 TMCO4Q5TGY1 634 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 PHACTR4Q8IZ21 702 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 USP33Q8TEY7 942 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 ARHGEF26Q96DR7 871 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 SPATA17Q96L03 361 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 SYT15Q9BQS2 421 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 FDXACB1Q9BRP7 624 aaPredicted RBP4.44□□□□□ -1.7
VCAN-209ENST00000513016 PPCSQ9HAB8 311 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 PSMD12O00232 456 aaPredicted RBP4.44□□□□□ -1.7
VCAN-209ENST00000513016 SPAG6O75602 509 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 EPHB2P29323 1055 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 FDFT1P37268 417 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 POLR2LP62875 67 aaKnown RBP4.44□□□□□ -1.7
VCAN-209ENST00000513016 FBXO47Q5MNV8 452 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 ATAT1Q5SQI0 421 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 ALS2CLQ60I27 953 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 METTL3Q86U44 580 aaKnown RBP4.44□□□□□ -1.7
VCAN-209ENST00000513016 SIRT2Q8IXJ6 389 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 CCDC197Q8NCU1 140 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 ADAM2Q99965 735 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 ASAH2Q9NR71 780 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 SPTLC3Q9NUV7 552 aa4.44□□□□□ -1.7
VCAN-209ENST00000513016 SCAF8Q9UPN6 1271 aaKnown RBP4.44□□□□□ -1.7
VCAN-209ENST00000513016 CDC42BPBQ9Y5S2 1711 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 KRT87PA6NCN2 255 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 CFLARO15519 480 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 KCNN4O15554 427 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 ASGR1P07306 291 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 POLR2EP19388 210 aaKnown RBP4.43□□□□□ -1.7
VCAN-209ENST00000513016 GUCY1A2P33402 732 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 FSTL1Q12841 308 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 NFIAQ12857 509 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 ITGA9Q13797 1035 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 AAK1Q2M2I8 961 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 MCOLN3Q8TDD5 553 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 NRBF2Q96F24 287 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 ABHD8Q96I13 439 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 TRIM9Q9C026 710 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.43□□□□□ -1.7
VCAN-209ENST00000513016 SF3B1O75533 1304 aaKnown RBP eCLIP4.43□□□□□ -1.7
VCAN-209ENST00000513016 CDC42BPAQ5VT25 1732 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.43□□□□□ -1.7
VCAN-209ENST00000513016 DDTLA6NHG4 134 aaPredicted RBP4.43□□□□□ -1.7
VCAN-209ENST00000513016 LRRC53A6NM62 1247 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 ATP8B1O43520 1251 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 MAGEC1O60732 1142 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 DTNBO60941 627 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 E2F6O75461 281 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 DDHD2O94830 711 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 CRTAMO95727 393 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 IGSF6O95976 241 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 MZF1P28698 734 aaPredicted RBP4.43□□□□□ -1.7
VCAN-209ENST00000513016 PPP3CCP48454 512 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 EXOSC10Q01780 885 aaKnown RBP4.43□□□□□ -1.7
VCAN-209ENST00000513016 GPS1Q13098 491 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 GIT2Q14161 759 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 FAM110CQ1W6H9 321 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 MMGT1Q8N4V1 131 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 PTPRN2Q92932 1015 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 ZFP42Q96MM3 310 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 BPIFA3Q9BQP9 254 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 TLE6Q9H808 572 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 SENP2Q9HC62 589 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 ZFATQ9P243 1243 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 DNPEPQ9ULA0 475 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 CEMIPQ8WUJ3 1361 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 UNCXA6NJT0 531 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 MSH4O15457 936 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 SOAT2O75908 522 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 CSH1P0DML2 217 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 CSH2P0DML3 217 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 U2AF2P26368 475 aaKnown RBP eCLIP4.43□□□□□ -1.7
VCAN-209ENST00000513016 NCALDP61601 193 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 MRPS6P82932 125 aaKnown RBP4.43□□□□□ -1.7
VCAN-209ENST00000513016 SMARCB1Q12824 385 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 DHX34Q14147 1143 aaKnown RBP4.43□□□□□ -1.7
VCAN-209ENST00000513016 HSP90AA5PQ58FG0 334 aa4.43□□□□□ -1.7
VCAN-209ENST00000513016 FAM46CQ5VWP2 391 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms