RNA–Protein interactions for RNA: ENST00000475470.1

RPUSD3-215, Transcript of RNA pseudouridylate synthase domain containing 3, humanhuman

TSL 2

Gene RPUSD3, Length 2,413 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3-215ENST00000475470 UBLCP1Q8WVY7 318 aaPredicted RBP16.24■□□□□ 0.19
RPUSD3-215ENST00000475470 C18orf25Q96B23 403 aaPredicted RBP16.24■□□□□ 0.19
RPUSD3-215ENST00000475470 CHST7Q9NS84 486 aa16.24■□□□□ 0.19
RPUSD3-215ENST00000475470 HOMER3Q9NSC5 361 aa16.24■□□□□ 0.19
RPUSD3-215ENST00000475470 ZDHHC18Q9NUE0 388 aa16.24■□□□□ 0.19
RPUSD3-215ENST00000475470 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.24■□□□□ 0.19
RPUSD3-215ENST00000475470 CNTN3Q9P232 1028 aa16.24■□□□□ 0.19
RPUSD3-215ENST00000475470 PARP2Q9UGN5 583 aa16.24■□□□□ 0.19
RPUSD3-215ENST00000475470 RALGAPA2Q2PPJ7 1873 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 PSMA2P25787 234 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 RFC1P35251 1148 aaPredicted RBP16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 ATP13A4Q4VNC1 1196 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 GNASQ5JWF2 1037 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 LRRC38Q5VT99 294 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 ALKAL1Q6UXT8 129 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 NIPA2Q8N8Q9 360 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 TRPV1Q8NER1 839 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 UBA3Q8TBC4 463 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 ATG4AQ8WYN0 398 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 RBM41Q96IZ5 413 aaKnown RBP16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 DCLK3Q9C098 648 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 KLHL11Q9NVR0 708 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 PSD3Q9NYI0 1048 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 PPEF2O14830 753 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 CA12O43570 354 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 KPNA6O60684 536 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 KRT1P04264 644 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 ERBB2P04626 1255 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 TCF4P15884 667 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 GPD2P43304 727 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 LMAN1P49257 510 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 FCGRTP55899 365 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 NFX1Q12986 1120 aaKnown RBP16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 KLF1Q13351 362 aaPredicted RBP16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 ZNF268Q14587 947 aaPredicted RBP16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 XYLT1Q86Y38 959 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 LRRC52Q8N7C0 313 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 FAM76AQ8TAV0 307 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 SLCO2A1Q92959 643 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 GRHL1Q9NZI5 618 aa16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 FEZ2Q9UHY8 353 aaPredicted RBP16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 UBQLN1Q9UMX0 589 aaKnown RBP16.23■□□□□ 0.19
RPUSD3-215ENST00000475470 MYADML2A6NDP7 307 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 ERICH4A6NGS2 130 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 PI4K2BG5E9Z4 385 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 ATF7P17544 494 aaPredicted RBP16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 PSMC4P43686 418 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 TM4SF4P48230 202 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 PDCLQ13371 301 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 UAP1Q16222 522 aaPredicted RBP16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 MFSD14CQ5VZR4 134 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 ZDHHC24Q6UX98 284 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 JOSD2Q8TAC2 188 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 FBXO25Q8TCJ0 367 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 GRK7Q8WTQ7 553 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 ARL8AQ96BM9 186 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 RNF19AQ9NV58 838 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 KLK14Q9P0G3 267 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 ATP8A1Q9Y2Q0 1164 aa16.22■□□□□ 0.19
RPUSD3-215ENST00000475470 HOXC8P31273 242 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 GSCP56915 257 aaPredicted RBP16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 KRT17Q04695 432 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 C9orf57Q5W0N0 161 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 TAF2Q6P1X5 1199 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 LCLAT1Q6UWP7 414 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 LRIG3Q6UXM1 1119 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 IPO4Q8TEX9 1081 aaKnown RBP16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 CCDC114Q96M63 670 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 MRPL45Q9BRJ2 306 aaKnown RBP16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 METTL5Q9NRN9 209 aaKnown RBP16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 DDX56Q9NY93 547 aaKnown RBP16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 MTRF1LQ9UGC7 380 aaKnown RBP16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 R3HDM2Q9Y2K5 976 aaKnown RBP16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 SMIM28A0A1B0GU29 152 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 PPFIA2O75334 1257 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 CD4P01730 458 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 GABRB2P47870 512 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 STILQ15468 1287 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 TTMPQ5BVD1 217 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 CEP85LQ5SZL2 805 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 SYDE1Q6ZW31 735 aaPredicted RBP16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 SLITRK1Q96PX8 696 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 ZIC5Q96T25 663 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 MTG1Q9BT17 334 aaPredicted RBP16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 ARHGAP39Q9C0H5 1083 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 TSPAN16Q9UKR8 245 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 SCN1AP35498 2009 aa16.21■□□□□ 0.19
RPUSD3-215ENST00000475470 GOLGA6L10A6NI86 522 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 XPOTO43592 962 aaKnown RBP16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 GAS8O95995 478 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 GJA9P57773 515 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 CALCOCO2Q13137 446 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 CCNG2Q16589 344 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 UBXN11Q5T124 520 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 KAZNQ674X7 775 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 ANKS1BQ7Z6G8 1248 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 C12orf29Q8N999 325 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 ATL2Q8NHH9 583 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 FNIP1Q8TF40 1166 aa16.2■□□□□ 0.18
RPUSD3-215ENST00000475470 SPC25Q9HBM1 224 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms