RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 CETN1Q12798 172 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 DUSP4Q13115 394 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 KCNJ12Q14500 433 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 CBX2Q14781 532 aaPredicted RBP18.08■□□□□ 0.48
SCAF11-206ENST00000474828 WDR44Q5JSH3 913 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 PPM1LQ5SGD2 360 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 ATAT1Q5SQI0 421 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 DPY19L2P1Q6NXN4 242 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 APTXQ7Z2E3 356 aaKnown RBP18.08■□□□□ 0.48
SCAF11-206ENST00000474828 WHAMMQ8TF30 809 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 TATDN2Q93075 761 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 JAKMIP2Q96AA8 810 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 CEP295NLQ96MC4 621 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 RIPOR3Q96MK2 946 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 TUBGCP2Q9BSJ2 902 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 SNX25Q9H3E2 840 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 CYP4F11Q9HBI6 524 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 WDR6Q9NNW5 1121 aaKnown RBP18.08■□□□□ 0.48
SCAF11-206ENST00000474828 FANCLQ9NW38 375 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 GTF3C4Q9UKN8 822 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 PCDHB5Q9Y5E4 795 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 TTC28Q96AY4 2481 aa18.08■□□□□ 0.48
SCAF11-206ENST00000474828 SYCE3A1L190 88 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 C19orf67A6NJJ6 358 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 ATP2C2O75185 946 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 WEE2P0C1S8 567 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 HAPLN1P10915 354 aaPredicted RBP18.07■□□□□ 0.48
SCAF11-206ENST00000474828 IL9P15248 144 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 PTPN1P18031 435 aaKnown RBP18.07■□□□□ 0.48
SCAF11-206ENST00000474828 ACAT1P24752 427 aaKnown RBP18.07■□□□□ 0.48
SCAF11-206ENST00000474828 ELF1P32519 619 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 TUFMP49411 452 aaKnown RBP18.07■□□□□ 0.48
SCAF11-206ENST00000474828 GCNT1Q02742 428 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 CUL2Q13617 745 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 IQCB1Q15051 598 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 CLUL1Q15846 466 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 VWA3BQ502W6 1294 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 EP400NLQ6ZTU2 488 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 DHX40Q8IX18 779 aaKnown RBP18.07■□□□□ 0.48
SCAF11-206ENST00000474828 B3GALNT2Q8NCR0 500 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 OR6B3Q8NGW1 331 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 NDST4Q9H3R1 872 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 LIMA1Q9UHB6 759 aaKnown RBP18.07■□□□□ 0.48
SCAF11-206ENST00000474828 CNTN6Q9UQ52 1028 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 USTQ9Y2C2 406 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 YIPF1Q9Y548 306 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 ASB3Q9Y575 518 aa18.07■□□□□ 0.48
SCAF11-206ENST00000474828 A8MXQ7 604 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 TNFRSF10AO00220 468 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 PRRG1O14668 218 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 XYLBO75191 536 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 TBXAS1P24557 533 aaPredicted RBP18.06■□□□□ 0.48
SCAF11-206ENST00000474828 MTIF2P46199 727 aaKnown RBP18.06■□□□□ 0.48
SCAF11-206ENST00000474828 RAP1GAPP47736 663 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 NDST1P52848 882 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 PLD1Q13393 1074 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 CCDC142Q17RM4 750 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 TTC9BQ8N6N2 239 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 SMG7Q92540 1137 aaKnown RBP18.06■□□□□ 0.48
SCAF11-206ENST00000474828 PCED1BQ96HM7 432 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 TNIP3Q96KP6 325 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 PGLYRP2Q96PD5 576 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 PHF7Q9BWX1 381 aaPredicted RBP18.06■□□□□ 0.48
SCAF11-206ENST00000474828 LRRC3Q9BY71 257 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 DPEP3Q9H4B8 488 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 POMKQ9H5K3 350 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 CEP72Q9P209 647 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 MAGEC2Q9UBF1 373 aaPredicted RBP18.06■□□□□ 0.48
SCAF11-206ENST00000474828 CDH22Q9UJ99 828 aa18.06■□□□□ 0.48
SCAF11-206ENST00000474828 MUC3AQ02505 3323 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 C2orf16Q68DN1 1984 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 MICAL2O94851 1124 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 PDGFRBP09619 1106 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 ATF6P18850 670 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 ACO1P21399 889 aaKnown RBP18.05■□□□□ 0.48
SCAF11-206ENST00000474828 ZNF165P49910 485 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 ZP2Q05996 745 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 PHLDB3Q6NSJ2 640 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 TRIM65Q6PJ69 517 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 VSTM1Q6UX27 236 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 SCARA5Q6ZMJ2 495 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 C4orf50Q6ZRC1 276 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 PAQR9Q6ZVX9 377 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 ADHFE1Q8IWW8 467 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 NT5C1BQ96P26 610 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 TWNKQ96RR1 684 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 ARID3AQ99856 593 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 INTS2Q9H0H0 1204 aaKnown RBP18.05■□□□□ 0.48
SCAF11-206ENST00000474828 CISHQ9NSE2 258 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 DNMT3BQ9UBC3 853 aaKnown RBP18.05■□□□□ 0.48
SCAF11-206ENST00000474828 HMGXB4Q9UGU5 601 aa18.05■□□□□ 0.48
SCAF11-206ENST00000474828 LOC730098B7Z3J9 87 aa18.04■□□□□ 0.48
SCAF11-206ENST00000474828 LRG1P02750 347 aa18.04■□□□□ 0.48
SCAF11-206ENST00000474828 PON1P27169 355 aa18.04■□□□□ 0.48
SCAF11-206ENST00000474828 PSMC1P62191 440 aaKnown RBP18.04■□□□□ 0.48
SCAF11-206ENST00000474828 TWF1Q12792 350 aa18.04■□□□□ 0.48
SCAF11-206ENST00000474828 KRT31Q15323 416 aa18.04■□□□□ 0.48
SCAF11-206ENST00000474828 GBP6Q6ZN66 633 aa18.04■□□□□ 0.48
SCAF11-206ENST00000474828 LEMD2Q8NC56 503 aa18.04■□□□□ 0.48
SCAF11-206ENST00000474828 PSMG2Q969U7 264 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms