RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SEC14L1Q92503 715 aa8.83□□□□□ -1
CD44-208ENST00000428726 UPF1Q92900 1129 aaKnown RBP eCLIP8.83□□□□□ -1
CD44-208ENST00000428726 DDX27Q96GQ7 796 aaKnown RBP8.83□□□□□ -1
CD44-208ENST00000428726 RAB17Q9H0T7 212 aa8.83□□□□□ -1
CD44-208ENST00000428726 NXF3Q9H4D5 531 aaKnown RBP8.83□□□□□ -1
CD44-208ENST00000428726 TUT1Q9H6E5 874 aaKnown RBP8.83□□□□□ -1
CD44-208ENST00000428726 RRAGCQ9HB90 399 aa8.83□□□□□ -1
CD44-208ENST00000428726 HAUS2Q9NVX0 235 aa8.83□□□□□ -1
CD44-208ENST00000428726 TUBGCP4Q9UGJ1 667 aa8.83□□□□□ -1
CD44-208ENST00000428726 SIX4Q9UIU6 781 aa8.83□□□□□ -1
CD44-208ENST00000428726 LTBP3Q9NS15 1303 aa8.83□□□□□ -1
CD44-208ENST00000428726 CST8O60676 142 aa8.83□□□□□ -1
CD44-208ENST00000428726 MTA2O94776 668 aa8.83□□□□□ -1
CD44-208ENST00000428726 CELF2O95319 508 aaKnown RBP8.83□□□□□ -1
CD44-208ENST00000428726 ERBB2P04626 1255 aa8.83□□□□□ -1
CD44-208ENST00000428726 CYP1A2P05177 515 aa8.83□□□□□ -1
CD44-208ENST00000428726 HOXC6P09630 235 aa8.83□□□□□ -1
CD44-208ENST00000428726 HSPA6P17066 643 aa8.83□□□□□ -1
CD44-208ENST00000428726 SSTR1P30872 391 aa8.83□□□□□ -1
CD44-208ENST00000428726 YARSP54577 528 aaKnown RBP8.83□□□□□ -1
CD44-208ENST00000428726 IRX4P78413 519 aa8.83□□□□□ -1
CD44-208ENST00000428726 BASP1P80723 227 aaKnown RBP8.83□□□□□ -1
CD44-208ENST00000428726 SLC20A2Q08357 652 aa8.83□□□□□ -1
CD44-208ENST00000428726 ZC3H12AQ5D1E8 599 aaKnown RBP8.83□□□□□ -1
CD44-208ENST00000428726 LRIG3Q6UXM1 1119 aa8.83□□□□□ -1
CD44-208ENST00000428726 MON1BQ7L1V2 547 aa8.83□□□□□ -1
CD44-208ENST00000428726 OR6B3Q8NGW1 331 aa8.83□□□□□ -1
CD44-208ENST00000428726 CD101Q93033 1021 aa8.83□□□□□ -1
CD44-208ENST00000428726 ZFP42Q96MM3 310 aa8.83□□□□□ -1
CD44-208ENST00000428726 ZMAT2Q96NC0 199 aaKnown RBP8.83□□□□□ -1
CD44-208ENST00000428726 RPS6KC1Q96S38 1066 aa8.83□□□□□ -1
CD44-208ENST00000428726 CGRRF1Q99675 332 aa8.83□□□□□ -1
CD44-208ENST00000428726 ELOVL4Q9GZR5 314 aa8.83□□□□□ -1
CD44-208ENST00000428726 IFT122Q9HBG6 1241 aa8.83□□□□□ -1
CD44-208ENST00000428726 AAASQ9NRG9 546 aa8.83□□□□□ -1
CD44-208ENST00000428726 MFHAS1Q9Y4C4 1052 aa8.83□□□□□ -1
CD44-208ENST00000428726 RLFQ13129 1914 aa8.83□□□□□ -1
CD44-208ENST00000428726 BRCA1P38398 1863 aaKnown RBP8.83□□□□□ -1
CD44-208ENST00000428726 WDR81Q562E7 1941 aa8.83□□□□□ -1
CD44-208ENST00000428726 CLDN5O00501 218 aa8.83□□□□□ -1
CD44-208ENST00000428726 RASGRF2O14827 1237 aa8.83□□□□□ -1
CD44-208ENST00000428726 OGTO15294 1046 aa8.83□□□□□ -1
CD44-208ENST00000428726 TNNC2P02585 160 aa8.83□□□□□ -1
CD44-208ENST00000428726 RARBP10826 455 aa8.83□□□□□ -1
CD44-208ENST00000428726 KRT3P12035 628 aa8.83□□□□□ -1
CD44-208ENST00000428726 ATF2P15336 505 aa8.83□□□□□ -1
CD44-208ENST00000428726 NDST1P52848 882 aa8.83□□□□□ -1
CD44-208ENST00000428726 SKOR1P84550 965 aa8.83□□□□□ -1
CD44-208ENST00000428726 MTMR3Q13615 1198 aa8.83□□□□□ -1
CD44-208ENST00000428726 HIC1Q14526 733 aa8.83□□□□□ -1
CD44-208ENST00000428726 PTGISQ16647 500 aa8.83□□□□□ -1
CD44-208ENST00000428726 ZNF667Q5HYK9 610 aa8.83□□□□□ -1
CD44-208ENST00000428726 LIN9Q5TKA1 542 aa8.83□□□□□ -1
CD44-208ENST00000428726 ANKRD22Q5VYY1 191 aa8.83□□□□□ -1
CD44-208ENST00000428726 EP400NLQ6ZTU2 488 aa8.83□□□□□ -1
CD44-208ENST00000428726 HACE1Q8IYU2 909 aa8.83□□□□□ -1
CD44-208ENST00000428726 ZBED8Q8IZ13 594 aa8.83□□□□□ -1
CD44-208ENST00000428726 FEZF2Q8TBJ5 459 aa8.83□□□□□ -1
CD44-208ENST00000428726 CABS1Q96KC9 395 aa8.83□□□□□ -1
CD44-208ENST00000428726 FAM81BQ96LP2 452 aa8.83□□□□□ -1
CD44-208ENST00000428726 TRIM6Q9C030 488 aaPredicted RBP8.83□□□□□ -1
CD44-208ENST00000428726 GJD2Q9UKL4 321 aa8.83□□□□□ -1
CD44-208ENST00000428726 ARID2Q68CP9 1835 aa8.82□□□□□ -1
CD44-208ENST00000428726 A0A0G2JLL6 359 aaPredicted RBP8.82□□□□□ -1
CD44-208ENST00000428726 E5RJQ4 531 aa8.82□□□□□ -1
CD44-208ENST00000428726 ZC3H11AO75152 810 aaKnown RBP eCLIP8.82□□□□□ -1
CD44-208ENST00000428726 CCDC130P13994 396 aa8.82□□□□□ -1
CD44-208ENST00000428726 PECAM1P16284 738 aaPredicted RBP8.82□□□□□ -1
CD44-208ENST00000428726 LMO2P25791 158 aa8.82□□□□□ -1
CD44-208ENST00000428726 OLIG2Q13516 323 aa8.82□□□□□ -1
CD44-208ENST00000428726 MPP2Q14168 576 aa8.82□□□□□ -1
CD44-208ENST00000428726 PPP2R5DQ14738 602 aa8.82□□□□□ -1
CD44-208ENST00000428726 TARBP2Q15633 366 aaKnown RBP8.82□□□□□ -1
CD44-208ENST00000428726 SLC10A6Q3KNW5 377 aa8.82□□□□□ -1
CD44-208ENST00000428726 ENOSF1Q7L5Y1 443 aa8.82□□□□□ -1
CD44-208ENST00000428726 PRRT2Q7Z6L0 340 aaPredicted RBP8.82□□□□□ -1
CD44-208ENST00000428726 RFX6Q8HWS3 928 aa8.82□□□□□ -1
CD44-208ENST00000428726 NPLOC4Q8TAT6 608 aa8.82□□□□□ -1
CD44-208ENST00000428726 LPPQ93052 612 aa8.82□□□□□ -1
CD44-208ENST00000428726 ZIC5Q96T25 663 aa8.82□□□□□ -1
CD44-208ENST00000428726 PTPN18Q99952 460 aa8.82□□□□□ -1
CD44-208ENST00000428726 MRPL45Q9BRJ2 306 aaKnown RBP8.82□□□□□ -1
CD44-208ENST00000428726 WNT8AQ9H1J5 351 aa8.82□□□□□ -1
CD44-208ENST00000428726 KIAA1586Q9HCI6 787 aa8.82□□□□□ -1
CD44-208ENST00000428726 ACSS2Q9NR19 701 aa8.82□□□□□ -1
CD44-208ENST00000428726 RASAL2Q9UJF2 1139 aa8.82□□□□□ -1
CD44-208ENST00000428726 FAM187AA6NFU0 413 aa8.82□□□□□ -1
CD44-208ENST00000428726 TP73O15350 636 aa8.82□□□□□ -1
CD44-208ENST00000428726 ASS1P00966 412 aaKnown RBP8.82□□□□□ -1
CD44-208ENST00000428726 SMPD1P17405 629 aa8.82□□□□□ -1
CD44-208ENST00000428726 PGGT1BP53609 377 aa8.82□□□□□ -1
CD44-208ENST00000428726 PPP2R2AP63151 447 aa8.82□□□□□ -1
CD44-208ENST00000428726 CRADDP78560 199 aa8.82□□□□□ -1
CD44-208ENST00000428726 GCNT1Q02742 428 aa8.82□□□□□ -1
CD44-208ENST00000428726 DHX34Q14147 1143 aaKnown RBP8.82□□□□□ -1
CD44-208ENST00000428726 TTLL4Q14679 1199 aa8.82□□□□□ -1
CD44-208ENST00000428726 BBS9Q3SYG4 887 aa8.82□□□□□ -1
CD44-208ENST00000428726 CATSPER4Q7RTX7 472 aa8.82□□□□□ -1
CD44-208ENST00000428726 LRRC34Q8IZ02 419 aa8.82□□□□□ -1
CD44-208ENST00000428726 ARFGAP1Q8N6T3 406 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms