RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 WDR90Q96KV7 1748 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 MAP3K6O95382 1288 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 IRAK1P51617 712 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 ENPEPQ07075 957 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 SH3PXD2AQ5TCZ1 1133 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 ZDHHC24Q6UX98 284 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 TMEM40Q8WWA1 233 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 SH3GL2Q99962 352 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 ADAM33Q9BZ11 813 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 GRHL1Q9NZI5 618 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 PCYOX1Q9UHG3 505 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 GOLGA8MH3BSY2 632 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 TULP2O00295 520 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 ERBB2P04626 1255 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 ATF2P15336 505 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 MCCD1P59942 119 aaPredicted RBP11.75□□□□□ -0.53
TCOF1-203ENST00000394269 ZNF252P-AS1Q0IIN9 211 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 MYO1EQ12965 1108 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 MAP2K5Q13163 448 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 MTMR3Q13615 1198 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 MFSD10Q14728 455 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 TAF5Q15542 800 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 GNASQ5JWF2 1037 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 LRRC31Q6UY01 552 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 VCPIP1Q96JH7 1222 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 DDX23Q9BUQ8 820 aaKnown RBP11.75□□□□□ -0.53
TCOF1-203ENST00000394269 DCLK3Q9C098 648 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 CNTN6Q9UQ52 1028 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 MYO9BQ13459 2157 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 DICER1Q9UPY3 1922 aaKnown RBP11.75□□□□□ -0.53
TCOF1-203ENST00000394269 ZNFX1Q9P2E3 1918 aaKnown RBP11.75□□□□□ -0.53
TCOF1-203ENST00000394269 PGK1P00558 417 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 EIF4BP23588 611 aaKnown RBP11.75□□□□□ -0.53
TCOF1-203ENST00000394269 HOXA11P31270 313 aaPredicted RBP11.75□□□□□ -0.53
TCOF1-203ENST00000394269 ITGA8P53708 1063 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 SEC24CP53992 1094 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 HIC1Q14526 733 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 TCEAL1Q15170 157 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 RAB6CQ53S08 254 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 TWF2Q6IBS0 349 aaKnown RBP11.75□□□□□ -0.53
TCOF1-203ENST00000394269 SCUBE3Q8IX30 993 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 LRRN4Q8WUT4 740 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 SELENOSQ9BQE4 189 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 MRPL45Q9BRJ2 306 aaKnown RBP11.75□□□□□ -0.53
TCOF1-203ENST00000394269 RAB6CQ9H0N0 254 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 ASB7Q9H672 318 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 ZDHHC18Q9NUE0 388 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 ANAPC5Q9UJX4 755 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 DNPEPQ9ULA0 475 aa11.75□□□□□ -0.53
TCOF1-203ENST00000394269 CAND2O75155 1236 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 RECQL4O94761 1208 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 ADORA2BP29275 332 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 CHKAP35790 457 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 CYP4F22Q6NT55 531 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 MREGQ8N565 214 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 GLIS1Q8NBF1 620 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 KCTD6Q8NC69 237 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 ATL2Q8NHH9 583 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 MDM1Q8TC05 714 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 TMEM121Q9BTD3 319 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 TBK1Q9UHD2 729 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 TSPAN16Q9UKR8 245 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 RANBP2P49792 3224 aaKnown RBP11.74□□□□□ -0.53
TCOF1-203ENST00000394269 SLC15A5A6NIM6 579 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 FOXO6A8MYZ6 492 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 SGK1O00141 431 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 CD48P09326 243 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 CCT5P48643 541 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 KYNUQ16719 465 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 C15orf59Q2T9L4 293 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-203ENST00000394269 KAT2BQ92831 832 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 PIWIL1Q96J94 861 aaKnown RBP11.74□□□□□ -0.53
TCOF1-203ENST00000394269 NT5C1AQ9BXI3 368 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 NGRNQ9NPE2 291 aaKnown RBP11.74□□□□□ -0.53
TCOF1-203ENST00000394269 SYNJ2BP-COX16A0A087WUM0 186 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 A8MXQ7 604 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 E5RJQ4 531 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 CILPO75339 1184 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 RNF8O76064 485 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 CXCL17Q6UXB2 119 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 TAX1BP1Q86VP1 789 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 CCDC33Q8N5R6 958 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 C9orf72Q96LT7 481 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 B3GNT5Q9BYG0 378 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 LRRC19Q9H756 370 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 COX16Q9P0S2 106 aa11.74□□□□□ -0.53
TCOF1-203ENST00000394269 ARID2Q68CP9 1835 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 PSTPIP1O43586 416 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 LSM8O95777 96 aaKnown RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 RARBP10826 455 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 FNTAP49354 379 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 LONRF1Q17RB8 773 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 P3H1Q32P28 736 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 NOTUMQ6P988 496 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 SLC27A1Q6PCB7 646 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 UBR7Q8N806 425 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 C3orf20Q8ND61 904 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 EPS8L3Q8TE67 593 aaKnown RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 IPO4Q8TEX9 1081 aaKnown RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 ZIC5Q96T25 663 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms