RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 VPS39Q96JC1 886 aa10.66□□□□□ -0.7
USP54-201ENST00000339859 SLC12A8A0AV02 714 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 DNM1LO00429 736 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 MYH3P11055 1940 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 C2orf54Q08AI8 447 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 NAB2Q15742 525 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 ZNF557Q8N988 423 aaPredicted RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 PPHLN1Q8NEY8 458 aaKnown RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 DCUN1D1Q96GG9 259 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 SENP8Q96LD8 212 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 CINPQ9BW66 212 aaPredicted RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 AP1M1Q9BXS5 423 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 DCLK3Q9C098 648 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 VPS18Q9P253 973 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 FAM8A1Q9UBU6 413 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 MID2Q9UJV3 735 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 TIMM13Q9Y5L4 95 aaPredicted RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 ZBTB39O15060 712 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 TREHO43280 583 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 GRAP2O75791 330 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 CDR2Q01850 454 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 EFEMP1Q12805 493 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 POLD3Q15054 466 aaPredicted RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 PDK1Q15118 436 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 LLGL1Q15334 1064 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 CARNMT1Q8N4J0 409 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 PDZD8Q8NEN9 1154 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 SLC35G2Q8TBE7 412 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 BLOC1S4Q9NUP1 217 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 DDIT4Q9NX09 232 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 SAGE1Q9NXZ1 904 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 SYNCRIPO60506 623 aaKnown RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 PAEPP09466 180 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 TKTL1P51854 596 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 RRP1BQ14684 758 aaKnown RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 FBXO46Q6PJ61 603 aaPredicted RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 SRRM1Q8IYB3 904 aaKnown RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 NPLOC4Q8TAT6 608 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 ATP6V1E2Q96A05 226 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.65□□□□□ -0.7
USP54-201ENST00000339859 RSPH14Q9UHP6 348 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 CCDC88AQ3V6T2 1871 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 LLGL2Q6P1M3 1020 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 PYROXD1Q8WU10 500 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 RSPH1Q8WYR4 309 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 N4BP2L2Q92802 583 aaPredicted RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 LENG1Q96BZ8 264 aaPredicted RBP10.65□□□□□ -0.7
USP54-201ENST00000339859 CDH9Q9ULB4 789 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 C2CD2Q9Y426 696 aa10.65□□□□□ -0.7
USP54-201ENST00000339859 MTSS1O43312 755 aa10.65□□□□□ -0.71
USP54-201ENST00000339859 TMEM253P0C7T8 217 aa10.65□□□□□ -0.71
USP54-201ENST00000339859 NDST1P52848 882 aa10.65□□□□□ -0.71
USP54-201ENST00000339859 APBA1Q02410 837 aa10.65□□□□□ -0.71
USP54-201ENST00000339859 ORC1Q13415 861 aa10.65□□□□□ -0.71
USP54-201ENST00000339859 FRA10AC1Q70Z53 315 aa10.65□□□□□ -0.71
USP54-201ENST00000339859 LPPQ93052 612 aa10.65□□□□□ -0.71
USP54-201ENST00000339859 ASAH2Q9NR71 780 aa10.65□□□□□ -0.71
USP54-201ENST00000339859 ZMYND8Q9ULU4 1186 aaPredicted RBP10.65□□□□□ -0.71
USP54-201ENST00000339859 DOLKQ9UPQ8 538 aa10.65□□□□□ -0.71
USP54-201ENST00000339859 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.64□□□□□ -0.71
USP54-201ENST00000339859 LRRIQ3A6PVS8 624 aaPredicted RBP10.64□□□□□ -0.71
USP54-201ENST00000339859 SLC9A3R1O14745 358 aaPredicted RBP10.64□□□□□ -0.71
USP54-201ENST00000339859 CXCL14O95715 111 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 EIF3EP60228 445 aaKnown RBP10.64□□□□□ -0.71
USP54-201ENST00000339859 FUT2Q10981 343 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 SMARCB1Q12824 385 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 BBS9Q3SYG4 887 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 CENPPQ6IPU0 288 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 DDX42Q86XP3 938 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP54-201ENST00000339859 NPAS4Q8IUM7 802 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 COL20A1Q9P218 1284 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 INTUQ9ULD6 942 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 N4BP2Q86UW6 1770 aaPredicted RBP10.64□□□□□ -0.71
USP54-201ENST00000339859 TRAV19A0A0A6YYK7 116 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 ANKRD63C9JTQ0 380 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 PLTPP55058 493 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 PID1Q7Z2X4 250 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 UNC93AQ86WB7 457 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 TAS1R2Q8TE23 839 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 PXYLP1Q8TE99 480 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 SCG3Q8WXD2 468 aaKnown RBP10.64□□□□□ -0.71
USP54-201ENST00000339859 TMEM117Q9H0C3 514 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 CDT1Q9H211 546 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 SMYD2Q9NRG4 433 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 POC1B-GALNT4F8VUJ3 575 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 ACADMP11310 421 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 RPS6KA2Q15349 733 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 PSMD5Q16401 504 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 P3H1Q32P28 736 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 ANO5Q75V66 913 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 TAS2R42Q7RTR8 314 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 PALB2Q86YC2 1186 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 TMEM161BQ8NDZ6 487 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 GIPC2Q8TF65 315 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 DDI1Q8WTU0 396 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 KRT35Q92764 455 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 MTMR8Q96EF0 704 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 RPRD1AQ96P16 312 aaPredicted RBP10.64□□□□□ -0.71
USP54-201ENST00000339859 ZNF197O14709 1029 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 GALCP54803 685 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms