RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 OGDHQ02218 1023 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 CAV1Q03135 178 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 LMNB2Q03252 620 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 MYO1EQ12965 1108 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 MAP2K5Q13163 448 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 ORC1Q13415 861 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 MORN1Q5T089 497 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 CATSPER4Q7RTX7 472 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 TMEM130Q8N3G9 435 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 HEXIM2Q96MH2 286 aaKnown RBP13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 TWNKQ96RR1 684 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 FAM49AQ9H0Q0 323 aaPredicted RBP13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 PLEKHA5Q9HAU0 1116 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 KLHL11Q9NVR0 708 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 HMGXB4Q9UGU5 601 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 GINS2Q9Y248 185 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 DERAQ9Y315 318 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 MICAL2O94851 1124 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 F2P00734 622 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 HMGCRP04035 888 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 ATF2P15336 505 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 ATF7P17544 494 aaPredicted RBP13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 PSMA2P25787 234 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 PTPN7P35236 360 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 INCA1Q0VD86 236 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 ZNF268Q14587 947 aaPredicted RBP13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 PCBP1Q15365 356 aaKnown RBP eCLIP13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 CNGA2Q16280 664 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 PRAMEF19Q5SWL8 479 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 SLC27A1Q6PCB7 646 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 ZNF365Q70YC5 407 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 CROCCP2Q86T23 111 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 BBOF1Q8ND07 529 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 FNIP1Q8TF40 1166 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 TSPYL1Q9H0U9 437 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 EPB41L4BQ9H329 900 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 RRAGCQ9HB90 399 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 CYTH4Q9UIA0 394 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 KIAA1257Q9ULG3 409 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 BARX2Q9UMQ3 279 aaPredicted RBP13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 GNEQ9Y223 722 aaKnown RBP13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 SMIM35A0A1B0GVV1 85 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 PI4K2BG5E9Z4 385 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 M0QYV0 167 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 TCF4P15884 667 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 HPDP32754 393 aaPredicted RBP13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 RFC1P35251 1148 aaPredicted RBP13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 ADCY8P40145 1251 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 YARSP54577 528 aaKnown RBP13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 TMEM62Q0P6H9 643 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 ATP13A4Q4VNC1 1196 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 SPOCD1Q6ZMY3 1216 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 POLNQ7Z5Q5 900 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 TLK2Q86UE8 772 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 XYLT1Q86Y38 959 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 CCDC89Q8N998 374 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 CPXM1Q96SM3 734 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 SEMA4AQ9H3S1 761 aa13.65□□□□□ -0.22
SPTLC1-201ENST00000262554 GRIN2DO15399 1336 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 GPR32O75388 356 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 CYP2C9P11712 490 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 HOXA11P31270 313 aaPredicted RBP13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 NDST1P52848 882 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 PDCLQ13371 301 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 SLC29A2Q14542 456 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 MFSD10Q14728 455 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 HADHQ16836 314 aaKnown RBP13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 TFDP3Q5H9I0 405 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 KAZNQ674X7 775 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 TTC19Q6DKK2 380 aaPredicted RBP13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 NOTUMQ6P988 496 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 MFSD7Q6UXD7 560 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 TRMT10CQ7L0Y3 403 aaKnown RBP13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 GSTA5Q7RTV2 222 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 ANKS1BQ7Z6G8 1248 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 CCDC25Q86WR0 208 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 DOCK3Q8IZD9 2030 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 TRAIPQ9BWF2 469 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 METTL5Q9NRN9 209 aaKnown RBP13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 ANAPC5Q9UJX4 755 aa13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 NOVA2Q9UNW9 492 aaKnown RBP13.64□□□□□ -0.23
SPTLC1-201ENST00000262554 LRRD1A4D1F6 860 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 MBLAC1A4D2B0 266 aaPredicted RBP13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 RIPK2O43353 540 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 ERBB2P04626 1255 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 KRT7P08729 469 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 KRT10P13645 584 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 IVDP26440 423 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 MDH1P40925 334 aaKnown RBP13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 GABRB2P47870 512 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 ITGA8P53708 1063 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 HUNKP57058 714 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 TRIP13Q15645 432 aaPredicted RBP13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 SKIDA1Q1XH10 827 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 DRICH1Q6PGQ1 229 aaPredicted RBP13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 RHBDF2Q6PJF5 856 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 CCHCR1Q8TD31 782 aa13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 IPO4Q8TEX9 1081 aaKnown RBP13.63□□□□□ -0.23
SPTLC1-201ENST00000262554 KAT2BQ92831 832 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms