RNA–Protein interactions for RNA: YMR123W

PKR1, Transcript of V-ATPase assembly factor, yeast

Gene PKR1, Length 369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PKR1	YMR123W	RPL39	P04650	51 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	URA6	P15700	204 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	YPK2	P18961	677 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	ARC19	P33204	171 aa	Known RBP	1.06	□□□□□ -2.24
PKR1	YMR123W	MRPL17	P36528	281 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	YBR219C	P38317	127 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	RGI1	P40043	161 aa	Predicted RBP	1.06	□□□□□ -2.24
PKR1	YMR123W	FLX1	P40464	311 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	AGE2	P40529	298 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	GCN20	P43535	752 aa	Known RBP	1.06	□□□□□ -2.24
PKR1	YMR123W	OTU1	P43558	301 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	YNR062C	P53748	327 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	YOL131W	Q08270	108 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	YOR343C	Q12484	108 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	YGR035W-A	Q45U48	73 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	SLH1	P53327	1967 aa	Known RBP	1.06	□□□□□ -2.24
PKR1	YMR123W	BPH1	P25356	2167 aa		1.06	□□□□□ -2.24
PKR1	YMR123W	TIM9	O74700	87 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	RPS1B	P23248	255 aa	Known RBP	1.05	□□□□□ -2.24
PKR1	YMR123W	RPC19	P28000	142 aa	Known RBP	1.05	□□□□□ -2.24
PKR1	YMR123W	PPA2	P28239	310 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	VMA6	P32366	345 aa	Known RBP	1.05	□□□□□ -2.24
PKR1	YMR123W	TIM12	P32830	109 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	NUF2	P33895	451 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	CBT1	P36038	271 aa	Predicted RBP	1.05	□□□□□ -2.24
PKR1	YMR123W	YBR032W	P38223	100 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	ERG28	P40030	148 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	YNL194C	P40169	301 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	BLM10	P43583	2143 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	MIC26	P50087	233 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	YNR064C	P53750	290 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	TIM11	P81449	96 aa	Predicted RBP	1.05	□□□□□ -2.24
PKR1	YMR123W	PET191	Q02772	108 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	DML1	Q03652	475 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	LPP1	Q04396	274 aa		1.05	□□□□□ -2.24
PKR1	YMR123W	ATG38	Q05789	226 aa	Known RBP	1.05	□□□□□ -2.24
PKR1	YMR123W	PRP11	Q07350	266 aa	Predicted RBP	1.05	□□□□□ -2.24
PKR1	YMR123W	YDR157W	A0A023PZE8	133 aa		1.04	□□□□□ -2.24
PKR1	YMR123W	REP2	P03872	296 aa		1.04	□□□□□ -2.24
PKR1	YMR123W	PET9	P18239	318 aa	Known RBP	1.04	□□□□□ -2.24
PKR1	YMR123W	FIG1	P38224	298 aa		1.04	□□□□□ -2.24
PKR1	YMR123W	MTW1	P39731	289 aa		1.04	□□□□□ -2.24
PKR1	YMR123W	ILM1	P47155	203 aa		1.04	□□□□□ -2.24
PKR1	YMR123W	NUP57	P48837	541 aa		1.04	□□□□□ -2.24
PKR1	YMR123W	CWC23	P52868	283 aa	Predicted RBP	1.04	□□□□□ -2.24
PKR1	YMR123W	MPC1	P53157	130 aa	Known RBP	1.04	□□□□□ -2.24
PKR1	YMR123W	GEP7	P53171	287 aa		1.04	□□□□□ -2.24
PKR1	YMR123W	YLR162W	Q06235	118 aa		1.04	□□□□□ -2.24
PKR1	YMR123W	YLR156W	P0CE96	114 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	YLR159W	P0CE97	114 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	YLR161W	P0CE98	114 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	RPL2A	P0CX45	254 aa	Known RBP	1.03	□□□□□ -2.24
PKR1	YMR123W	RPL2B	P0CX46	254 aa	Known RBP	1.03	□□□□□ -2.24
PKR1	YMR123W	STE18	P18852	110 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	MRPS28	P21771	286 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	APA2	P22108	325 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	1.03	□□□□□ -2.24	not detected
PKR1	YMR123W	DOG2	P38773	246 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	RPL13B	P40212	199 aa	Known RBP	1.03	□□□□□ -2.24
PKR1	YMR123W	HPM1	P40481	377 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	YRB2	P40517	327 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	MSS2	P40990	351 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	RPL33B	P41056	107 aa	Known RBP	1.03	□□□□□ -2.24
PKR1	YMR123W	YGR201C	P42936	225 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	MGA1	P53050	456 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	YNR077C	P53758	84 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	YDC1	Q02896	317 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	VPS71	Q03433	280 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	BNA7	Q04066	261 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	YDR391C	Q04170	232 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	RNH202	Q05635	350 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	YPR127W	Q06494	345 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	NSL1	Q12143	216 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	RPL13A	Q12690	199 aa	Predicted RBP	1.03	□□□□□ -2.24
PKR1	YMR123W	TDA8	Q6B2U8	126 aa		1.03	□□□□□ -2.24
PKR1	YMR123W	SIR2	P06700	562 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	RPL24B	P24000	155 aa	Known RBP	1.02	□□□□□ -2.25
PKR1	YMR123W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	1.02	□□□□□ -2.25	not detected
PKR1	YMR123W	TCA17	P32613	152 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	UPS2	P35200	230 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	UTP30	P36144	274 aa	Known RBP	1.02	□□□□□ -2.25
PKR1	YMR123W	RMD6	P39975	231 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	COX15	P40086	486 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	FIP1	P45976	327 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	BXI1	P48558	297 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	YGL235W	P53071	178 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	FYV6	P53913	173 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	ABF2	Q02486	183 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	DIG2	Q03373	323 aa	Known RBP	1.02	□□□□□ -2.25
PKR1	YMR123W	YDR248C	Q03786	193 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	GPI17	Q04080	534 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	DYN3	Q04949	312 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	GGA1	Q06336	557 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	SPC3	Q12133	184 aa		1.02	□□□□□ -2.25
PKR1	YMR123W	COX5B	P00425	151 aa		1.01	□□□□□ -2.25
PKR1	YMR123W	RPL28	P02406	149 aa	Known RBP	1.01	□□□□□ -2.25
PKR1	YMR123W	KIN28	P06242	306 aa		1.01	□□□□□ -2.25
PKR1	YMR123W	RPL27B	P0C2H7	136 aa	Known RBP	1.01	□□□□□ -2.25
PKR1	YMR123W	YBR121C-A	P0C5L4	52 aa		1.01	□□□□□ -2.25
PKR1	YMR123W	NHP6B	P11633	99 aa	Known RBP	1.01	□□□□□ -2.25

Retrieved 100 of 5,963 RNA–protein pairs in 122.2 ms