RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 RHOP08100 348 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 TGM1P22735 817 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 POLR2BP30876 1174 aaKnown RBP12.53□□□□□ -0.4
CLN3-257ENST00000637110 PNPLA4P41247 253 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 CYP2J2P51589 502 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 BFSP1Q12934 665 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 SURF1Q15526 300 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 MLF2Q15773 248 aaPredicted RBP12.53□□□□□ -0.4
CLN3-257ENST00000637110 CYP4A22Q5TCH4 519 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 LMBRD2Q68DH5 695 aaPredicted RBP12.53□□□□□ -0.4
CLN3-257ENST00000637110 CNNM4Q6P4Q7 775 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 PDZD4Q76G19 769 aaPredicted RBP12.53□□□□□ -0.4
CLN3-257ENST00000637110 ITFG1Q8TB96 612 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 FGF13Q92913 245 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 CCDC47Q96A33 483 aaKnown RBP12.53□□□□□ -0.4
CLN3-257ENST00000637110 MCRS1Q96EZ8 462 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 ANKRD36BP1Q96IX9 119 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 KIAA1586Q9HCI6 787 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 PARD6AQ9NPB6 346 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 USP25Q9UHP3 1055 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 UBE4BO95155 1302 aa12.53□□□□□ -0.4
CLN3-257ENST00000637110 CNOT1A5YKK6 2376 aaKnown RBP12.52□□□□□ -0.4
CLN3-257ENST00000637110 RALGAPA1Q6GYQ0 2036 aa12.52□□□□□ -0.4
CLN3-257ENST00000637110 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.52□□□□□ -0.41
CLN3-257ENST00000637110 GOLGA6L4A6NEF3 574 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 FAM170BA6NMN3 283 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 KPNA7A9QM74 516 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 ACTN4O43707 911 aaKnown RBP12.52□□□□□ -0.41
CLN3-257ENST00000637110 FOXD2O60548 495 aaPredicted RBP12.52□□□□□ -0.41
CLN3-257ENST00000637110 CLSTN1O94985 981 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 PAPLNO95428 1278 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 MYL4P12829 197 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 KCNA4P22459 653 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 ALDH1A3P47895 512 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 CDR1P51861 262 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 NRLP54845 237 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 WNT7BP56706 349 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 RBP5P82980 135 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 PFKPQ01813 784 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 SPEM2Q0P670 501 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 DUSP4Q13115 394 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 PLD1Q13393 1074 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 SNW1Q13573 536 aaKnown RBP12.52□□□□□ -0.41
CLN3-257ENST00000637110 MYBPC2Q14324 1141 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 LAIR1Q6GTX8 287 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 EPM2AIP1Q7L775 607 aaPredicted RBP12.52□□□□□ -0.41
CLN3-257ENST00000637110 CBWD2Q8IUF1 395 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 FSIP1Q8NA03 581 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 FAM200AQ8TCP9 573 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 SCFD1Q8WVM8 642 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 NELL1Q92832 810 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 FAM84AQ96KN4 292 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 FNBP1Q96RU3 617 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 DDX23Q9BUQ8 820 aaKnown RBP12.52□□□□□ -0.41
CLN3-257ENST00000637110 GDPD2Q9HCC8 539 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 AGPAT3Q9NRZ7 376 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 MAFFQ9ULX9 164 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 SLC27A5Q9Y2P5 690 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 ANK1P16157 1881 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 FASNP49327 2511 aaKnown RBP12.52□□□□□ -0.41
CLN3-257ENST00000637110 DOCK6Q96HP0 2047 aa12.52□□□□□ -0.41
CLN3-257ENST00000637110 ANKRD11Q6UB99 2663 aaPredicted RBP12.52□□□□□ -0.41
CLN3-257ENST00000637110 ZNF197O14709 1029 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 EXOC3O60645 756 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 HUS1O60921 280 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 POU2F2P09086 479 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 DLATP10515 647 aaKnown RBP12.51□□□□□ -0.41
CLN3-257ENST00000637110 TNNI1P19237 187 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 HOXD13P35453 343 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 NDUFA8P51970 172 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 EPHB3P54753 998 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 SNRPFP62306 86 aaKnown RBP12.51□□□□□ -0.41
CLN3-257ENST00000637110 GPC5P78333 572 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 NUCB2P80303 420 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 PSMD2Q13200 908 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 GPR17Q13304 367 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 PPP2R5DQ14738 602 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 DUOXA2Q1HG44 320 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 KMT5BQ4FZB7 885 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 SLC39A12Q504Y0 691 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 WSCD1Q658N2 575 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 MTSS1LQ765P7 747 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 C1orf127Q8N9H9 656 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 XXYLT1Q8NBI6 393 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 CCDC127Q96BQ5 260 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 TMEM209Q96SK2 561 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 NELL2Q99435 816 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 SEPT5Q99719 369 aaPredicted RBP12.51□□□□□ -0.41
CLN3-257ENST00000637110 MTMR12Q9C0I1 747 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 ASAH2Q9NR71 780 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 ITGA11Q9UKX5 1188 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 YIPF1Q9Y548 306 aa12.51□□□□□ -0.41
CLN3-257ENST00000637110 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.51□□□□□ -0.41
CLN3-257ENST00000637110 TCHHQ07283 1943 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 SCN1AP35498 2009 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 CYP11A1P05108 521 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 RETP07949 1114 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 RPS9P46781 194 aaKnown RBP12.5□□□□□ -0.41
CLN3-257ENST00000637110 SHC2P98077 582 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 MYO1EQ12965 1108 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms