RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 SOCS4Q8WXH5 440 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 ING2Q9H160 280 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 ALG13Q9NP73 1137 aaKnown RBP11.89□□□□□ -0.51
CLIP1-219ENST00000620786 CASTOR2A6NHX0 329 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 SYNCRIPO60506 623 aaKnown RBP11.89□□□□□ -0.51
CLIP1-219ENST00000620786 CHRM3P20309 590 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 MUTP22033 750 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 FMR1Q06787 632 aaKnown RBP eCLIP11.89□□□□□ -0.514e-6■■■■□ 21.6
CLIP1-219ENST00000620786 LRRC14Q15048 493 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 ZNF280DQ6N043 979 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 SAMD3Q8N6K7 520 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 SCUBE2Q9NQ36 999 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 SETD4Q9NVD3 440 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 NSMCE4AQ9NXX6 385 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 ITIH6Q6UXX5 1313 aa11.89□□□□□ -0.51
CLIP1-219ENST00000620786 FAM47DPA6NHR8 397 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 GOLGA8RI6L899 631 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 EPHB2P29323 1055 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 AVPR1AP37288 418 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 PPP2R2AP63151 447 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 ACOT1Q86TX2 421 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 HERC6Q8IVU3 1022 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 FAM118BQ9BPY3 351 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 TASP1Q9H6P5 420 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 XPNPEP3Q9NQH7 507 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 GIMAP4Q9NUV9 329 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 HEATR9A2RTY3 570 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 ALDH2P05091 517 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 DSG3P32926 999 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 TXNRD3Q86VQ6 643 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 DNERQ8NFT8 737 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 SPATA18Q8TC71 538 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 GMCL1Q96IK5 515 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 MKNK1Q9BUB5 465 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 PAK5Q9P286 719 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 ADGRA2Q96PE1 1338 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 POLR1AO95602 1720 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-219ENST00000620786 NPM3O75607 178 aaKnown RBP11.88□□□□□ -0.51
CLIP1-219ENST00000620786 RHOBTB1O94844 696 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 GRIK4Q16099 956 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 USP50Q70EL3 339 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-219ENST00000620786 ITIH5Q86UX2 942 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 FEZF2Q8TBJ5 459 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 OSMRQ99650 979 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 AGO4Q9HCK5 861 aaKnown RBP11.88□□□□□ -0.51
CLIP1-219ENST00000620786 E2F8A0AVK6 867 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 NFIBO00712 420 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 CYP2C8P10632 490 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 RAP1GAPP47736 663 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 STAT4Q14765 748 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 DDI1Q8WTU0 396 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 CYP4F11Q9HBI6 524 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 ANGPT2O15123 496 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 KLRC2P26717 231 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 MAP2K2P36507 400 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 MAP3K7CLP57077 242 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 MFSD10Q14728 455 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 GJB7Q6PEY0 223 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 TFB1MQ8WVM0 346 aaKnown RBP11.88□□□□□ -0.51
CLIP1-219ENST00000620786 MS4A14Q96JA4 679 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 IGFLR1Q9H665 355 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 AGPAT3Q9NRZ7 376 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 MEGF6O75095 1541 aa11.88□□□□□ -0.51
CLIP1-219ENST00000620786 CXCL11O14625 94 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 CAPN15O75808 1086 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 BYSLQ13895 437 aaKnown RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 HMX1Q9NP08 348 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 AKR1A1P14550 325 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 IL1R1P14778 569 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 SLC26A2P50443 739 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 KPNA1P52294 538 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 LRRC74AQ0VAA2 488 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 EFEMP1Q12805 493 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 PLD1Q13393 1074 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 CUL3Q13618 768 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 TRIML2Q8N7C3 387 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 DNAJB3Q8WWF6 145 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 TRIM4Q9C037 500 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 NDE1Q9NXR1 346 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 ADORA2AP29274 412 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 ABCE1P61221 599 aaKnown RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 PTK6Q13882 451 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 PTGISQ16647 500 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 CCDC144BQ3MJ40 725 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 MDH1BQ5I0G3 518 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 AARS2Q5JTZ9 985 aaKnown RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 HIBCHQ6NVY1 386 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 METTL7BQ6UX53 244 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 EMILIN2Q9BXX0 1053 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 CDV3Q9UKY7 258 aaKnown RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 A0A087WZ62 844 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 POLBP06746 335 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 EPB42P16452 691 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 OXCT1P55809 520 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 NAB2Q15742 525 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 USP13Q92995 863 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 FDXACB1Q9BRP7 624 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms