RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 C2orf15Q8WU43 125 aaKnown RBP10.76□□□□□ -0.69
RFFL-208ENST00000581039 TCEAL3Q969E4 200 aa10.76□□□□□ -0.69
RFFL-208ENST00000581039 FAM212AQ96EL1 285 aa10.76□□□□□ -0.69
RFFL-208ENST00000581039 HAPLN2Q9GZV7 340 aa10.76□□□□□ -0.69
RFFL-208ENST00000581039 ZCWPW1Q9H0M4 648 aa10.76□□□□□ -0.69
RFFL-208ENST00000581039 DUSP15Q9H1R2 295 aaPredicted RBP10.76□□□□□ -0.69
RFFL-208ENST00000581039 IL21Q9HBE4 155 aa10.76□□□□□ -0.69
RFFL-208ENST00000581039 POLR3BQ9NW08 1133 aaPredicted RBP10.76□□□□□ -0.69
RFFL-208ENST00000581039 DSEQ9UL01 958 aa10.76□□□□□ -0.69
RFFL-208ENST00000581039 CITO14578 2027 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 ATRXP46100 2492 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 PDCD11Q14690 1871 aaKnown RBP10.75□□□□□ -0.69
RFFL-208ENST00000581039 OTOL1A6NHN0 477 aaPredicted RBP10.75□□□□□ -0.69
RFFL-208ENST00000581039 C1QTNF9BB2RNN3 333 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 LAD1O00515 517 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 PPEF2O14830 753 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 C1QTNF9P0C862 333 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 ATF6P18850 670 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 DDX6P26196 483 aaKnown RBP eCLIP10.75□□□□□ -0.69
RFFL-208ENST00000581039 SMARCB1Q12824 385 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 KARSQ15046 597 aaKnown RBP10.75□□□□□ -0.69
RFFL-208ENST00000581039 ENOX2Q16206 610 aaKnown RBP10.75□□□□□ -0.69
RFFL-208ENST00000581039 FBXO43Q4G163 708 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 C9orf57Q5W0N0 161 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 UNQ6494/PRO21346Q6UXR6 183 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 SYT2Q8N9I0 419 aaPredicted RBP10.75□□□□□ -0.69
RFFL-208ENST00000581039 FAM184AQ8NB25 1140 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 USP13Q92995 863 aaPredicted RBP10.75□□□□□ -0.69
RFFL-208ENST00000581039 HHIPQ96QV1 700 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 P2RY13Q9BPV8 354 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 LLPHQ9BRT6 129 aaKnown RBP10.75□□□□□ -0.69
RFFL-208ENST00000581039 EDEM2Q9BV94 578 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 FBRSL1Q9HCM7 1045 aaKnown RBP10.75□□□□□ -0.69
RFFL-208ENST00000581039 HPS4Q9NQG7 708 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 TDP1Q9NUW8 608 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 KCND2Q9NZV8 630 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 LARSQ9P2J5 1176 aaKnown RBP10.75□□□□□ -0.69
RFFL-208ENST00000581039 ZMIZ1Q9ULJ6 1067 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 CCL26Q9Y258 94 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 FAM208BQ5VWN6 2430 aa10.75□□□□□ -0.69
RFFL-208ENST00000581039 GREB1Q4ZG55 1949 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 BCLAF3A2AJT9 711 aaKnown RBP10.74□□□□□ -0.69
RFFL-208ENST00000581039 SOBPA7XYQ1 873 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 PIRO00625 290 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 CYB561D2O14569 222 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 HNRNPDLO14979 420 aaKnown RBP10.74□□□□□ -0.69
RFFL-208ENST00000581039 KHNYNO15037 678 aaKnown RBP10.74□□□□□ -0.69
RFFL-208ENST00000581039 DCLK1O15075 740 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 OGTO15294 1046 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 APBB3O95704 486 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 CYP11A1P05108 521 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 HAPLN1P10915 354 aaPredicted RBP10.74□□□□□ -0.69
RFFL-208ENST00000581039 ARSAP15289 507 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 GBP1P32455 592 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 PRPHP41219 470 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 TOB1P50616 345 aaPredicted RBP10.74□□□□□ -0.69
RFFL-208ENST00000581039 NLRP12P59046 1061 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 ST3GAL1Q11201 340 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 FOXC1Q12948 553 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 PSMD2Q13200 908 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 PDGFRLQ15198 375 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 IL17AQ16552 155 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 SH3PXD2AQ5TCZ1 1133 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 TXNDC8Q6A555 127 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 JADE1Q6IE81 842 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 SYT13Q7L8C5 426 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 CCDC83Q8IWF9 413 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 DCP1BQ8IZD4 617 aaKnown RBP10.74□□□□□ -0.69
RFFL-208ENST00000581039 KCTD17Q8N5Z5 321 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 KDF1Q8NAX2 398 aaPredicted RBP10.74□□□□□ -0.69
RFFL-208ENST00000581039 RPLP0P6Q8NHW5 317 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 SPPL2BQ8TCT7 592 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 MRPS31Q92665 395 aaKnown RBP10.74□□□□□ -0.69
RFFL-208ENST00000581039 PLIN2Q99541 437 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 MMTAG2Q9BU76 263 aaKnown RBP10.74□□□□□ -0.69
RFFL-208ENST00000581039 MSTO1Q9BUK6 570 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 KIF9Q9HAQ2 790 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 EBF1Q9UH73 591 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 LIMCH1Q9UPQ0 1083 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 PCDHB6Q9Y5E3 794 aa10.74□□□□□ -0.69
RFFL-208ENST00000581039 SPAG17Q6Q759 2223 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 NPHP3-ACAD11A0A0J9YXS1 232 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 GIPC1O14908 333 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 F11P03951 625 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 ADRB2P07550 413 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 PLA2G4BP0C869 781 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 SCP2P22307 547 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 U2AF2P26368 475 aaKnown RBP eCLIP10.73□□□□□ -0.694e-6■□□□□ 10.9
RFFL-208ENST00000581039 NMT1P30419 496 aaKnown RBP10.73□□□□□ -0.69
RFFL-208ENST00000581039 GJA4P35212 333 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 DGKEP52429 567 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 NCKAP1LP55160 1127 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 HMGN5P82970 282 aaKnown RBP10.73□□□□□ -0.69
RFFL-208ENST00000581039 ZNF252P-AS1Q0IIN9 211 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 COL9A2Q14055 689 aaPredicted RBP10.73□□□□□ -0.69
RFFL-208ENST00000581039 DMC1Q14565 340 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 TMEM132DQ14C87 1099 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 USP39Q53GS9 565 aaKnown RBP10.73□□□□□ -0.69
RFFL-208ENST00000581039 TMEM150AQ86TG1 271 aa10.73□□□□□ -0.69
RFFL-208ENST00000581039 C11orf74Q86VG3 221 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms